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MassTRIX: Mass TRanslator into Pathways

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JobID: EXAMPLE_yeast

***  yeast all pathways neg mode (Br-, Cl-) highlight genes  ***

sce Saccharomyces cerevisiae

 
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PATHWAYS

MapKEGG PathwayNmapNorgNidNorgid
sce00010Glycolysis / Gluconeogenesis perl /home/masstrix3/exec/31 26 14
sce00020Citrate cycle (TCA cycle) perl /home/masstrix3/exec/20 17 3
sce00030Pentose phosphate pathway perl /home/masstrix3/exec/32 19 10
sce00040Pentose and glucuronate interconversions perl /home/masstrix3/exec/55 12 14
sce00051Fructose and mannose metabolism perl /home/masstrix3/exec/48 16 17
sce00052Galactose metabolism perl /home/masstrix3/exec/41 16 21
sce00061Fatty acid biosynthesis perl /home/masstrix3/exec/49 13 7
sce00062Fatty acid elongation perl /home/masstrix3/exec/36 11 1
sce00071Fatty acid metabolism perl /home/masstrix3/exec/50 11 4
sce00072Synthesis and degradation of ketone bodies perl /home/masstrix3/exec/6 3 0
sce00100Steroid biosynthesis perl /home/masstrix3/exec/51 21 16
sce00130Ubiquinone and other terpenoid-quinone biosynthesis perl /home/masstrix3/exec/76 10 1
sce00190Oxidative phosphorylation perl /home/masstrix3/exec/16 13 0
sce00230Purine metabolism perl /home/masstrix3/exec/92 59 8
sce00240Pyrimidine metabolism perl /home/masstrix3/exec/59 34 1
sce00250Alanine, aspartate and glutamate metabolism perl /home/masstrix3/exec/24 20 3
sce00260Glycine, serine and threonine metabolism perl /home/masstrix3/exec/49 28 3
sce00270Cysteine and methionine metabolism perl /home/masstrix3/exec/56 33 1
sce00280Valine, leucine and isoleucine degradation perl /home/masstrix3/exec/41 14 0
sce00290Valine, leucine and isoleucine biosynthesis perl /home/masstrix3/exec/24 21 7
sce00300Lysine biosynthesis perl /home/masstrix3/exec/32 15 4
sce00310Lysine degradation perl /home/masstrix3/exec/47 13 5
sce00330Arginine and proline metabolism perl /home/masstrix3/exec/90 33 4
sce00340Histidine metabolism perl /home/masstrix3/exec/44 13 1
sce00350Tyrosine metabolism perl /home/masstrix3/exec/76 5 3
sce00360Phenylalanine metabolism perl /home/masstrix3/exec/63 6 5
sce00380Tryptophan metabolism perl /home/masstrix3/exec/80 25 1
sce00400Phenylalanine, tyrosine and tryptophan biosynthesis perl /home/masstrix3/exec/27 22 6
sce00410beta-Alanine metabolism perl /home/masstrix3/exec/31 8 1
sce00430Taurine and hypotaurine metabolism perl /home/masstrix3/exec/22 6 1
sce00450Selenocompound metabolism perl /home/masstrix3/exec/27 6 1
sce00460Cyanoamino acid metabolism perl /home/masstrix3/exec/43 7 2
sce00480Glutathione metabolism perl /home/masstrix3/exec/38 21 1
sce00500Starch and sucrose metabolism perl /home/masstrix3/exec/50 20 17
sce00510N-Glycan biosynthesis perl /home/masstrix3/exec/13 11 0
sce00511Other glycan degradation perl /home/masstrix3/exec/0 0 0
sce00513Various types of N-glycan biosynthesis perl /home/masstrix3/exec/0 0 0
sce00514Other types of O-glycan biosynthesis perl /home/masstrix3/exec/0 0 0
sce00520Amino sugar and nucleotide sugar metabolism perl /home/masstrix3/exec/87 22 12
sce00561Glycerolipid metabolism perl /home/masstrix3/exec/33 12 4
sce00562Inositol phosphate metabolism perl /home/masstrix3/exec/39 19 7
sce00563Glycosylphosphatidylinositol(GPI)-anchor biosynthesis perl /home/masstrix3/exec/6 5 0
sce00564Glycerophospholipid metabolism perl /home/masstrix3/exec/46 28 5
sce00565Ether lipid metabolism perl /home/masstrix3/exec/23 13 4
sce00590Arachidonic acid metabolism perl /home/masstrix3/exec/75 9 2
sce00591Linoleic acid metabolism perl /home/masstrix3/exec/26 3 17
sce00592alpha-Linolenic acid metabolism perl /home/masstrix3/exec/40 1 21
sce00600Sphingolipid metabolism perl /home/masstrix3/exec/25 12 0
sce00620Pyruvate metabolism perl /home/masstrix3/exec/32 19 4
sce00630Glyoxylate and dicarboxylate metabolism perl /home/masstrix3/exec/50 13 8
sce00640Propanoate metabolism perl /home/masstrix3/exec/36 12 1
sce00650Butanoate metabolism perl /home/masstrix3/exec/40 16 6
sce00670One carbon pool by folate perl /home/masstrix3/exec/9 8 0
sce00680Methane metabolism perl /home/masstrix3/exec/80 30 9
sce00730Thiamine metabolism perl /home/masstrix3/exec/26 12 3
sce00740Riboflavin metabolism perl /home/masstrix3/exec/23 11 1
sce00750Vitamin B6 metabolism perl /home/masstrix3/exec/32 10 8
sce00760Nicotinate and nicotinamide metabolism perl /home/masstrix3/exec/47 9 6
sce00770Pantothenate and CoA biosynthesis perl /home/masstrix3/exec/28 20 4
sce00780Biotin metabolism perl /home/masstrix3/exec/11 6 2
sce00785Lipoic acid metabolism perl /home/masstrix3/exec/6 6 0
sce00790Folate biosynthesis perl /home/masstrix3/exec/29 17 0
sce00860Porphyrin and chlorophyll metabolism perl /home/masstrix3/exec/124 19 1
sce00900Terpenoid backbone biosynthesis perl /home/masstrix3/exec/32 13 1
sce00910Nitrogen metabolism perl /home/masstrix3/exec/26 8 0
sce00920Sulfur metabolism perl /home/masstrix3/exec/18 14 0
sce00970Aminoacyl-tRNA biosynthesis perl /home/masstrix3/exec/53 46 5
sce01040Biosynthesis of unsaturated fatty acids perl /home/masstrix3/exec/54 7 20
N/AMetabolic pathways perl /home/masstrix3/exec/1528 511 123
N/ABiosynthesis of secondary metabolites perl /home/masstrix3/exec/1231 188 93
sce02010ABC transporters perl /home/masstrix3/exec/91 0 13
sce03008Ribosome biogenesis in eukaryotes perl /home/masstrix3/exec/0 0 0
sce03010Ribosome perl /home/masstrix3/exec/0 0 0
sce03013RNA transport perl /home/masstrix3/exec/3 0 0
sce03015mRNA surveillance pathway perl /home/masstrix3/exec/0 0 0
sce03018RNA degradation perl /home/masstrix3/exec/1 0 0
sce03020RNA polymerase perl /home/masstrix3/exec/0 0 0
sce03022Basal transcription factors perl /home/masstrix3/exec/0 0 0
sce03030DNA replication perl /home/masstrix3/exec/0 0 0
sce03040Spliceosome perl /home/masstrix3/exec/0 0 0
sce03050Proteasome perl /home/masstrix3/exec/0 0 0
sce03060Protein export perl /home/masstrix3/exec/0 0 0
sce03410Base excision repair perl /home/masstrix3/exec/0 0 0
sce03420Nucleotide excision repair perl /home/masstrix3/exec/0 0 0
sce03430Mismatch repair perl /home/masstrix3/exec/0 0 0
sce03440Homologous recombination perl /home/masstrix3/exec/0 0 0
sce03450Non-homologous end-joining perl /home/masstrix3/exec/0 0 0
sce04011MAPK signaling pathway - yeast perl /home/masstrix3/exec/0 0 0
sce04070Phosphatidylinositol signaling system perl /home/masstrix3/exec/27 0 4
sce04111Cell cycle - yeast perl /home/masstrix3/exec/2 0 1
sce04113Meiosis - yeast perl /home/masstrix3/exec/3 0 2
sce04120Ubiquitin mediated proteolysis perl /home/masstrix3/exec/0 0 0
sce04122Sulfur relay system perl /home/masstrix3/exec/10 0 0
sce04130SNARE interactions in vesicular transport perl /home/masstrix3/exec/0 0 0
sce04140Regulation of autophagy perl /home/masstrix3/exec/5 0 0
sce04141Protein processing in endoplasmic reticulum perl /home/masstrix3/exec/1 0 0
sce04144Endocytosis perl /home/masstrix3/exec/7 0 0
sce04145Phagosome perl /home/masstrix3/exec/5 0 0
sce04146Peroxisome perl /home/masstrix3/exec/0 0 0

Nmap Number of metabolites on a map
Norg Number of metabolites on that map from sce
Nid Number of metabolites on that map that have been identified
Norgid Number of metabolites on that map from sce that have been identified (bold if significantly enriched)

Pathway coloring is currently not possible due to changes in the KEGG API. We are working on this issue!

If these results do not correspond to what you expected, take a look at the log files


KEGG Data is provided by the Kanehisa Laboratories for academic use. Any commercial use of KEGG data requires a license agreement from Pathway Solutions Inc. The Helmholtz Zentrum München imprint applies. If you find results from this site helpful for your research, please cite:

K. Suhre and P. Schmitt-Kopplin, MassTRIX: Mass TRanslator Into Pathways, Nucleic Acids Research, Volume 36, Web Server issue, W481-W484, 2008.

This page is maintained by Brigitte Waegele and Karsten Suhre, last modification: 07 December 2011

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