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server

JobID: 150527164019600

***  Protocol Test  ***

  Metabolites  |  Samples  |  Quality Check  |  PCA  |  Kendall  |  Hypothesis test  |  Logs  |  Input data  |  Download results  

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Running METAP SERVER
Wed May 27 16:41:01 CEST 2015
ID=150527164019600
/home/metap2/exec:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
/home/metap2/data
+ echo 'we are here'
we are here
+ pwd
/home/metap2/public_html/users/150527164019600
+ hostname
metap
+ uname -a
Linux metap 3.13.0-43-generic #72-Ubuntu SMP Mon Dec 8 19:35:06 UTC 2014 x86_64 x86_64 x86_64 GNU/Li...
+ echo 'this is the environment'
this is the environment
+ env
RATIOS=n
OUTLIER=n
MISSING=n
DATADIR=/home/metap2/data
SHELL=/bin/sh
JOBID=Protocol Test
REFERENCE=n
PATH=/home/metap2/exec:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
PWD=/home/metap2/public_html/users/150527164019600
PRIVAT=0
LANG=en_US.UTF-8
SHLVL=1
HOME=/home/metap2
ID=150527164019600
DEL_METABS=n
FORMAT=csv
LOGNAME=metap2
EMAIL=HB
USERID=HB
DEVELOPT=
_=/usr/bin/env
+ echo 'this is a first R script that works on the input data'
this is a first R script that works on the input data
+ '[' '' = werner ']'
+ '[' '' = karsten ']'
+ '[' '' = gabi ']'
+ '[' '' = elisabeth ']'
+ process_metaP_data.R
RUNNING /home/metap2/exec/process_metaP_data.R
Use of uninitialized value $out0 in substitution (s///) at /home/metap2/exec/readAux.pl line 66.
Use of uninitialized value $out0 in substitution (s///) at /home/metap2/exec/readAux.pl line 67.
Use of uninitialized value in transliteration (tr///) at /home/metap2/exec/readAux.pl line 68.
Use of uninitialized value $out0 in concatenation (.) or string at /home/metap2/exec/readAux.pl line...
Use of uninitialized value $max_length in numeric lt (<) at /home/metap2/exec/readAux.pl line 71.
-rw-rw-r-- 1 metap2 metap2 48027 May 27 16:41 .R.Rout
  adding: PCAID_propOfVar.png (deflated 16%)
  adding: PCA_PC1_PC3.map (deflated 79%)
  adding: PCAID_PC2_PC3.png (deflated 26%)
  adding: summary.csv (deflated 58%)
  adding: colsToMark.x.csv (deflated 71%)
  adding: phenotypes.csv (deflated 78%)
  adding: data_all.csv (deflated 67%)
  adding: PCAPhase_PC1_PC3.png (deflated 24%)
  adding: pValuesForAllMetabolites__ID.csv (deflated 58%)
  adding: PCA_PC1_PC2.png (deflated 29%)
  adding: processing_log.txt (deflated 53%)
  adding: options (deflated 39%)
  adding: colsToMark.csv (deflated 10%)
  adding: PCAPhase_PC2_PC3.map (deflated 79%)
  adding: PCAPhase_PC1_PC2.png (deflated 30%)
  adding: PCA_PC1_PC2.map (deflated 79%)
  adding: PCAID.pdf (deflated 79%)
  adding: PCA_PC2_PC3.map (deflated 79%)
  adding: hypothesisTests_complete_data.pdf (deflated 88%)
  adding: pValuesForAllMetabolites_ID_Phase.csv (deflated 74%)
  adding: pValuesForAllMetabolites__Phase.csv (deflated 64%)
  adding: PCAID_PC2_PC3.map (deflated 79%)
  adding: bonferroni.csv (deflated 20%)
  adding: hypothesisTests_separated_for_Phase.pdf (deflated 89%)
  adding: PCAPhase_PC2_PC3.png (deflated 26%)
  adding: rowsToMark.csv (deflated 75%)
  adding: metabNamesMapping.csv (deflated 68%)
  adding: PCA.pdf (deflated 79%)
  adding: out_params.txt (stored 0%)
  adding: input (deflated 66%)
  adding: PCAID_PC1_PC2.png (deflated 29%)
  adding: data.csv (deflated 66%)
  adding: PCAPhase_PC1_PC3.map (deflated 79%)
  adding: phenotypes.txt (deflated 79%)
  adding: phenotypes_for_QC.csv (deflated 71%)
  adding: histograms.pdf (deflated 91%)
  adding: PCAPhase.pdf (deflated 79%)
  adding: barplots/C18OH.Conc_barplot.png (deflated 30%)
  adding: barplots/Val.Conc_barplot_ID.png (deflated 20%)
  adding: barplots/Phe.Conc_barplot.png (deflated 35%)
  adding: barplots/C5.Conc_barplot_Phase.png (deflated 26%)
  adding: barplots/C5OH.Conc_barplot_ID.png (deflated 24%)
  adding: barplots/C10.1.Conc_barplot.png (deflated 27%)
  adding: barplots/C18.Conc_barplot_Phase.png (deflated 22%)
  adding: barplots/C14.1.Conc_barplot_Phase.png (deflated 22%)
  adding: barplots/C3DC.Conc_barplot_ID.png (deflated 21%)
  adding: barplots/C18.1.Conc_barplot.png (deflated 35%)
  adding: barplots/Ala.Conc_barplot_ID.png (deflated 25%)
  adding: barplots/C16OH.Conc_barplot.png (deflated 25%)
  adding: barplots/Arg.Conc_barplot.map (deflated 81%)
  adding: barplots/C10.1.Conc_barplot_Phase.png (deflated 23%)
  adding: barplots/C5DC.Conc_barplot.map (deflated 80%)
  adding: barplots/C3.Conc_barplot.png (deflated 30%)
  adding: barplots/C18OH.Conc_barplot_ID.png (deflated 23%)
  adding: barplots/Cit.Conc_barplot.map (deflated 80%)
  adding: barplots/C4.Conc_barplot_ID.png (deflated 23%)
  adding: barplots/Asp.Conc_barplot_ID.png (deflated 25%)
  adding: barplots/Gly.Conc_barplot_ID.png (deflated 22%)
  adding: barplots/C8.Conc_barplot_ID.png (deflated 21%)
  adding: barplots/Met.Conc_barplot_ID.png (deflated 28%)
  adding: barplots/C10.1.Conc_barplot_ID.png (deflated 23%)
  adding: barplots/C16OH.Conc_barplot_ID.png (deflated 20%)
  adding: barplots/C16.Conc_barplot_Phase.png (deflated 19%)
  adding: barplots/C16.1OH.Conc_barplot.png (deflated 30%)
  adding: barplots/C4.Conc_barplot.png (deflated 34%)
  adding: barplots/Gly.Conc_barplot.map (deflated 81%)
  adding: barplots/C6.Conc_barplot_ID.png (deflated 19%)
  adding: barplots/C18OH.Conc_barplot_Phase.png (deflated 23%)
  adding: barplots/C4DC.Conc_barplot.png (deflated 29%)
  adding: barplots/C5DC.Conc_barplot.png (deflated 27%)
  adding: barplots/Orn.Conc_barplot.png (deflated 32%)
  adding: barplots/C18.2OH.Conc_barplot.map (deflated 81%)
  adding: barplots/C16OH.Conc_barplot_Phase.png (deflated 18%)
  adding: barplots/C10.Conc_barplot.map (deflated 81%)
  adding: barplots/C10.Conc_barplot_ID.png (deflated 23%)
  adding: barplots/C14.2.Conc_barplot.map (deflated 80%)
  adding: barplots/C6.Conc_barplot.png (deflated 25%)
  adding: barplots/Leu.Conc_barplot.map (deflated 81%)
  adding: barplots/C8.Conc_barplot_Phase.png (deflated 21%)
  adding: barplots/C18.2OH.Conc_barplot_ID.png (deflated 20%)
  adding: barplots/Met.Conc_barplot.png (deflated 33%)
  adding: barplots/C18.Conc_barplot_ID.png (deflated 25%)
  adding: barplots/C16.Conc_barplot.map (deflated 80%)
  adding: barplots/C14.Conc_barplot_Phase.png (deflated 21%)
  adding: barplots/Asp.Conc_barplot_Phase.png (deflated 32%)
  adding: barplots/C16.1.Conc_barplot.map (deflated 81%)
  adding: barplots/C0.Conc_barplot_Phase.png (deflated 25%)
  adding: barplots/C3DC.Conc_barplot_Phase.png (deflated 20%)
  adding: barplots/C18.1.Conc_barplot_ID.png (deflated 26%)
  adding: barplots/C5.Conc_barplot_ID.png (deflated 22%)
  adding: barplots/Arg.Conc_barplot_ID.png (deflated 28%)
  adding: barplots/C8.1.Conc_barplot.map (deflated 80%)
  adding: barplots/Glu.Conc_barplot_Phase.png (deflated 32%)
  adding: barplots/C14.Conc_barplot.map (deflated 80%)
  adding: barplots/C18.Conc_barplot.map (deflated 81%)
  adding: barplots/C18.2OH.Conc_barplot.png (deflated 25%)
  adding: barplots/Met.Conc_barplot.map (deflated 81%)
  adding: barplots/C6.Conc_barplot_Phase.png (deflated 21%)
  adding: barplots/C8.1.Conc_barplot.png (deflated 26%)
  adding: barplots/Tyr.Conc_barplot.png (deflated 34%)
  adding: barplots/C16.Conc_barplot.png (deflated 25%)
  adding: barplots/C4DC.Conc_barplot.map (deflated 80%)
  adding: barplots/C3DC.Conc_barplot.png (deflated 25%)
  adding: barplots/C14.2.Conc_barplot_Phase.png (deflated 23%)
  adding: barplots/C10.1.Conc_barplot.map (deflated 81%)
  adding: barplots/C5DC.Conc_barplot_ID.png (deflated 22%)
  adding: barplots/C16OH.Conc_barplot.map (deflated 81%)
  adding: barplots/Orn.Conc_barplot.map (deflated 80%)
  adding: barplots/C16.1OH.Conc_barplot.map (deflated 81%)
  adding: barplots/C3DC.Conc_barplot.map (deflated 80%)
  adding: barplots/C14.1.Conc_barplot_ID.png (deflated 22%)
  adding: barplots/Cit.Conc_barplot.png (deflated 29%)
  adding: barplots/Orn.Conc_barplot_Phase.png (deflated 27%)
  adding: barplots/C14.2.Conc_barplot_ID.png (deflated 23%)
  adding: barplots/C5.1.Conc_barplot_Phase.png (deflated 22%)
  adding: barplots/C18.1OH.Conc_barplot.png (deflated 29%)
  adding: barplots/C18.1OH.Conc_barplot_Phase.png (deflated 22%)
  adding: barplots/C4.Conc_barplot_Phase.png (deflated 30%)
  adding: barplots/Arg.Conc_barplot.png (deflated 37%)
  adding: barplots/Phe.Conc_barplot_Phase.png (deflated 30%)
  adding: barplots/Asp.Conc_barplot.map (deflated 80%)
  adding: barplots/C14OH.Conc_barplot_ID.png (deflated 24%)
  adding: barplots/C0.Conc_barplot.map (deflated 80%)
  adding: barplots/Tyr.Conc_barplot_ID.png (deflated 31%)
  adding: barplots/C4.Conc_barplot.map (deflated 81%)
  adding: barplots/Glu.Conc_barplot_ID.png (deflated 25%)
  adding: barplots/Leu.Conc_barplot.png (deflated 37%)
  adding: barplots/C12.Conc_barplot_Phase.png (deflated 19%)
  adding: barplots/C16.1OH.Conc_barplot_ID.png (deflated 21%)
  adding: barplots/Gly.Conc_barplot_Phase.png (deflated 29%)
  adding: barplots/C14OH.Conc_barplot_Phase.png (deflated 24%)
  adding: barplots/C4OH.Conc_barplot_Phase.png (deflated 21%)
  adding: barplots/Met.Conc_barplot_Phase.png (deflated 26%)
  adding: barplots/C3.Conc_barplot.map (deflated 81%)
  adding: barplots/C18.2OH.Conc_barplot_Phase.png (deflated 18%)
  adding: barplots/C12.Conc_barplot.map (deflated 81%)
  adding: barplots/C5DC.Conc_barplot_Phase.png (deflated 23%)
  adding: barplots/C0.Conc_barplot.png (deflated 32%)
  adding: barplots/C12.Conc_barplot_ID.png (deflated 22%)
  adding: barplots/Ala.Conc_barplot.png (deflated 38%)
  adding: barplots/Tyr.Conc_barplot_Phase.png (deflated 28%)
  adding: barplots/C3.Conc_barplot_Phase.png (deflated 22%)
  adding: barplots/C5.1.Conc_barplot.png (deflated 28%)
  adding: barplots/C14.Conc_barplot.png (deflated 26%)
  adding: barplots/C18.1.Conc_barplot_Phase.png (deflated 24%)
  adding: barplots/C18.1OH.Conc_barplot_ID.png (deflated 24%)
  adding: barplots/C14OH.Conc_barplot.map (deflated 81%)
  adding: barplots/C5OH.Conc_barplot_Phase.png (deflated 24%)
  adding: barplots/Glu.Conc_barplot.png (deflated 40%)
  adding: barplots/C5.Conc_barplot.map (deflated 81%)
  adding: barplots/C16.1.Conc_barplot_Phase.png (deflated 20%)
  adding: barplots/C14OH.Conc_barplot.png (deflated 28%)
  adding: barplots/Phe.Conc_barplot.map (deflated 81%)
  adding: barplots/C16.Conc_barplot_ID.png (deflated 22%)
  adding: barplots/C8.Conc_barplot.map (deflated 81%)
  adding: barplots/Ala.Conc_barplot.map (deflated 81%)
  adding: barplots/C14.2.Conc_barplot.png (deflated 29%)
  adding: barplots/C14.Conc_barplot_ID.png (deflated 20%)
  adding: barplots/C14.1.Conc_barplot.png (deflated 37%)
  adding: barplots/C5.Conc_barplot.png (deflated 30%)
  adding: barplots/Leu.Conc_barplot_Phase.png (deflated 31%)
  adding: barplots/C18.Conc_barplot.png (deflated 30%)
  adding: barplots/C16.1.Conc_barplot_ID.png (deflated 20%)
  adding: barplots/C8.1.Conc_barplot_Phase.png (deflated 21%)
  adding: barplots/Cit.Conc_barplot_Phase.png (deflated 24%)
  adding: barplots/C4OH.Conc_barplot.png (deflated 28%)
  adding: barplots/C5.1.Conc_barplot_ID.png (deflated 20%)
  adding: barplots/C3.Conc_barplot_ID.png (deflated 20%)
  adding: barplots/C4DC.Conc_barplot_ID.png (deflated 26%)
  adding: barplots/C2.Conc_barplot.png (deflated 37%)
  adding: barplots/C6.Conc_barplot.map (deflated 80%)
  adding: barplots/Phe.Conc_barplot_ID.png (deflated 22%)
  adding: barplots/C5.1.Conc_barplot.map (deflated 81%)
  adding: barplots/Leu.Conc_barplot_ID.png (deflated 24%)
  adding: barplots/Gly.Conc_barplot.png (deflated 32%)
  adding: barplots/Ala.Conc_barplot_Phase.png (deflated 30%)
  adding: barplots/C4DC.Conc_barplot_Phase.png (deflated 25%)
  adding: barplots/C2.Conc_barplot.map (deflated 81%)
  adding: barplots/Val.Conc_barplot.map (deflated 80%)
  adding: barplots/C5OH.Conc_barplot.png (deflated 27%)
  adding: barplots/C12.Conc_barplot.png (deflated 26%)
  adding: barplots/Val.Conc_barplot.png (deflated 29%)
  adding: barplots/C18OH.Conc_barplot.map (deflated 81%)
  adding: barplots/C2.Conc_barplot_Phase.png (deflated 30%)
  adding: barplots/C0.Conc_barplot_ID.png (deflated 24%)
  adding: barplots/C16.1OH.Conc_barplot_Phase.png (deflated 21%)
  adding: barplots/C8.1.Conc_barplot_ID.png (deflated 23%)
  adding: barplots/C10.Conc_barplot_Phase.png (deflated 23%)
  adding: barplots/C18.1.Conc_barplot.map (deflated 81%)
  adding: barplots/Orn.Conc_barplot_ID.png (deflated 21%)
  adding: barplots/Arg.Conc_barplot_Phase.png (deflated 34%)
  adding: barplots/C4OH.Conc_barplot.map (deflated 80%)
  adding: barplots/C4OH.Conc_barplot_ID.png (deflated 23%)
  adding: barplots/C2.Conc_barplot_ID.png (deflated 23%)
  adding: barplots/Asp.Conc_barplot.png (deflated 41%)
  adding: barplots/Val.Conc_barplot_Phase.png (deflated 26%)
  adding: barplots/Tyr.Conc_barplot.map (deflated 81%)
  adding: barplots/C8.Conc_barplot.png (deflated 28%)
  adding: barplots/C16.1.Conc_barplot.png (deflated 27%)
  adding: barplots/Glu.Conc_barplot.map (deflated 81%)
  adding: barplots/Cit.Conc_barplot_ID.png (deflated 22%)
  adding: barplots/C18.1OH.Conc_barplot.map (deflated 81%)
  adding: barplots/C14.1.Conc_barplot.map (deflated 81%)
  adding: barplots/C10.Conc_barplot.png (deflated 28%)
  adding: barplots/C5OH.Conc_barplot.map (deflated 81%)
  adding: data_all_beforeCheck.csv (deflated 67%)
  adding: data_beforeCheck.csv (deflated 67%)
  adding: PCAID_PC1_PC3.map (deflated 79%)
  adding: PCA_PC1_PC3.png (deflated 25%)
  adding: phenotypes_nominal.csv (deflated 78%)
  adding: pca.rotations.csv (deflated 52%)
  adding: PCAPhase_PC1_PC2.map (deflated 79%)
  adding: PCA_propOfVar.png (deflated 21%)
  adding: PCAID_PC1_PC2.map (deflated 79%)
  adding: aux.txt (stored 0%)
  adding: PCAPhase_propOfVar.png (deflated 16%)
  adding: server_log.txt (deflated 85%)
  adding: PCAID_PC1_PC3.png (deflated 25%)
  adding: hypothesisTests_separated_for_ID.pdf (deflated 89%)
  adding: PCA_PC2_PC3.png (deflated 24%)
  adding: pValuesForAllMetabolites_Phase_ID.csv (deflated 73%)
  adding: phenotypes_beforeCheck.csv (deflated 78%)
FINISHED with /home/metap2/exec/process_metaP_data.R
+ echo 'these are the files that are now here:'
these are the files that are now here:
+ ls -ltra
total 2052
-rw-r--r--    1 www-data www-data   5490 May 27 16:40 input.tmp
-rw-r--r--    1 www-data www-data   5490 May 27 16:40 input
-rw-r--r--    1 www-data www-data    639 May 27 16:40 phenotypes.txt.tmp
-rw-r--r--    1 www-data www-data    639 May 27 16:40 phenotypes.txt
-rw-r--r--    1 www-data www-data      0 May 27 16:40 aux.txt
-rw-r--r--    1 www-data www-data    227 May 27 16:40 options
-rwxr-xr-x    1 www-data www-data    587 May 27 16:40 metaPjob.cmd
drwxrwxrwx 1096 metap2   metap2   122880 May 27 16:41 ..
-rw-rw-r--    1 metap2   metap2        1 May 27 16:41 out_params.txt
-rw-rw-r--    1 metap2   metap2     5470 May 27 16:41 input_4R
-rw-rw-r--    1 metap2   metap2      841 May 27 16:41 metabNamesMapping.csv
-rw-rw-r--    1 metap2   metap2     5501 May 27 16:41 data_beforeCheck.csv
-rw-rw-r--    1 metap2   metap2     5677 May 27 16:41 data_all_beforeCheck.csv
-rw-rw-r--    1 metap2   metap2      620 May 27 16:41 phenotypes_beforeCheck.csv
-rw-rw-r--    1 metap2   metap2        2 May 27 16:41 cv.ok
-rw-rw-r--    1 metap2   metap2      551 May 27 16:41 colsToMark.x.csv
-rw-rw-r--    1 metap2   metap2       29 May 27 16:41 colsToMark.csv
-rw-rw-r--    1 metap2   metap2      366 May 27 16:41 rowsToMark.csv
-rw-rw-r--    1 metap2   metap2     5377 May 27 16:41 data.csv
-rw-rw-r--    1 metap2   metap2      323 May 27 16:41 phenotypes_for_QC.csv
-rw-rw-r--    1 metap2   metap2      620 May 27 16:41 phenotypes.csv
-rw-rw-r--    1 metap2   metap2     5676 May 27 16:41 data_all.csv
-rw-rw-r--    1 metap2   metap2      620 May 27 16:41 phenotypes_nominal.csv
-rw-rw-r--    1 metap2   metap2     4131 May 27 16:41 summary.csv
-rw-rw-r--    1 metap2   metap2   258642 May 27 16:41 histograms.pdf
drwxrwxrwx    2 www-data www-data  12288 May 27 16:41 barplots
-rw-rw-r--    1 metap2   metap2     1311 May 27 16:41 pValuesForAllMetabolites__ID.csv
-rw-rw-r--    1 metap2   metap2     1428 May 27 16:41 pValuesForAllMetabolites__Phase.csv
-rw-rw-r--    1 metap2   metap2   253682 May 27 16:41 hypothesisTests_complete_data.pdf
-rw-rw-r--    1 metap2   metap2     1573 May 27 16:41 pValuesForAllMetabolites_ID_Phase.csv
-rw-rw-r--    1 metap2   metap2   269089 May 27 16:41 hypothesisTests_separated_for_ID.pdf
-rw-rw-r--    1 metap2   metap2      114 May 27 16:41 bonferroni.csv
-rw-rw-r--    1 metap2   metap2     1593 May 27 16:41 pValuesForAllMetabolites_Phase_ID.csv
-rw-rw-r--    1 metap2   metap2   270212 May 27 16:41 hypothesisTests_separated_for_Phase.pdf
-rw-rw-r--    1 metap2   metap2     2364 May 27 16:41 PCA_PC1_PC2.map
-rw-rw-r--    1 metap2   metap2     1930 May 27 16:41 PCA_PC1_PC2.png
-rw-rw-r--    1 metap2   metap2     2359 May 27 16:41 PCA_PC1_PC3.map
-rw-rw-r--    1 metap2   metap2     1999 May 27 16:41 PCA_PC1_PC3.png
-rw-rw-r--    1 metap2   metap2     2356 May 27 16:41 PCA_PC2_PC3.map
-rw-rw-r--    1 metap2   metap2     2004 May 27 16:41 PCA_PC2_PC3.png
-rw-rw-r--    1 metap2   metap2    11807 May 27 16:41 PCA.pdf
-rw-rw-r--    1 metap2   metap2    15031 May 27 16:41 pca.rotations.csv
-rw-rw-r--    1 metap2   metap2     2370 May 27 16:41 PCAID_PC1_PC2.map
-rw-rw-r--    1 metap2   metap2     1963 May 27 16:41 PCAID_PC1_PC2.png
-rw-rw-r--    1 metap2   metap2     2365 May 27 16:41 PCAID_PC1_PC3.map
-rw-rw-r--    1 metap2   metap2     2022 May 27 16:41 PCAID_PC1_PC3.png
-rw-rw-r--    1 metap2   metap2     2362 May 27 16:41 PCAID_PC2_PC3.map
-rw-rw-r--    1 metap2   metap2     2027 May 27 16:41 PCAID_PC2_PC3.png
-rw-rw-r--    1 metap2   metap2    12806 May 27 16:41 PCAID.pdf
-rw-rw-r--    1 metap2   metap2     2379 May 27 16:41 PCAPhase_PC1_PC2.map
-rw-rw-r--    1 metap2   metap2     1971 May 27 16:41 PCAPhase_PC1_PC2.png
-rw-rw-r--    1 metap2   metap2     2374 May 27 16:41 PCAPhase_PC1_PC3.map
-rw-rw-r--    1 metap2   metap2     2029 May 27 16:41 PCAPhase_PC1_PC3.png
-rw-rw-r--    1 metap2   metap2     2371 May 27 16:41 PCAPhase_PC2_PC3.map
-rw-rw-r--    1 metap2   metap2     2032 May 27 16:41 PCAPhase_PC2_PC3.png
-rw-rw-r--    1 metap2   metap2    13038 May 27 16:41 PCAPhase.pdf
-rw-rw-r--    1 metap2   metap2    48027 May 27 16:41 .R.Rout
-rw-rw-r--    1 metap2   metap2     2543 May 27 16:41 PCAPhase_propOfVar.png
-rw-rw-r--    1 metap2   metap2     2520 May 27 16:41 PCAID_propOfVar.png
-rw-rw-r--    1 metap2   metap2     2120 May 27 16:41 PCA_propOfVar.png
-rw-rw-r--    1 metap2   metap2     1245 May 27 16:41 processing_log.txt
-rw-rw-r--    1 metap2   metap2    13934 May 27 16:41 server_log.txt
-rw-rw-r--    1 metap2   metap2   538161 May 27 16:41 download.zip
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OPTION:FORMAT:data format: ' csv ' OPTION:MISSING:treat LOD/out of quant. data as missing: ' n ' OPTION:OUTLIER:drop outliers : ' n ' OPTION:REFERENCE:drop reference samples : ' n ' OPTION:DEL_METABS:drop metabolites with cv > 0.25 : ' n ' OPTION:RATIOS:calculate metabolite ratios : ' n ' AUX:Barplots of each metabolite class have equal y axis: TRUE Fileformat CSV - deleted lines - win-lin Read CSV dataset with 44 columns and 18 rows Data format: csv EXTRACT: 18 samples and 43 metabolites extracted PHENOTYPES_UPLOAD:Found 18 matched lines with 2 phenotypes specified
PHENOTYPES_UPLOAD:Found ID Phase as non-data quality phenotypes
REPLICATES:No replicates BATCHES:No batches Wrote machted dataset to data_all_beforeCheck.csv No replicates in data No extreme outliers identified No extreme outliers identified 18 samples and 43 metabolites in checked data set Wrote machted dataset to data_all.csv Phenotype ID is nominal Phenotype Phase is nominal Wrote summary.csv file 42 Distribution plots generated Boxplots generated Boxplots generated Boxplots and hypothesis tests depending on ID Boxplots generated Boxplots and hypothesis tests depending on Phase Boxplots generated 1 phenotypes processed for PCA






KEGG Data is provided by the Kanehisa Laboratories for academic use. Any commercial use of KEGG data requires a license agreement from Pathway Solutions Inc.
The Helmholtz Zentrum München imprint applies.

This page is maintained by Gabi Kastenmüller and Werner Römisch-Margl.
Last modification: 28 December 2009

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