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server

JobID: 1606161612388064

***  P1_male  ***

  Metabolites  |  Samples  |  Quality Check  |  PCA  |  Kendall  |  Hypothesis test  |  Logs  |  Input data  |  Download results  

LOGFILES

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Running METAP SERVER
Thu Jun 16 16:13:01 CEST 2016
ID=1606161612388064
/home/metap2/exec:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
/home/metap2/data
+ echo 'we are here'
we are here
+ pwd
/home/metap2/public_html/users/1606161612388064
+ hostname
metap
+ uname -a
Linux metap 3.13.0-79-generic #123-Ubuntu SMP Fri Feb 19 14:27:58 UTC 2016 x86_64 x86_64 x86_64 GNU/...
+ echo 'this is the environment'
this is the environment
+ env
RATIOS=n
OUTLIER=n
MISSING=n
DATADIR=/home/metap2/data
SHELL=/bin/sh
JOBID=P1_male
REFERENCE=n
PATH=/home/metap2/exec:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
PWD=/home/metap2/public_html/users/1606161612388064
PRIVAT=0
LANG=en_US.UTF-8
SHLVL=1
HOME=/home/metap2
ID=1606161612388064
DEL_METABS=n
FORMAT=absoluteIDQ
LOGNAME=metap2
EMAIL=unknown
USERID=unknown
DEVELOPT=
_=/usr/bin/env
+ echo 'this is a first R script that works on the input data'
this is a first R script that works on the input data
+ '[' '' = werner ']'
+ '[' '' = karsten ']'
+ '[' '' = gabi ']'
+ '[' '' = elisabeth ']'
+ process_metaP_data.R
RUNNING /home/metap2/exec/process_metaP_data.R
Use of uninitialized value $out0 in substitution (s///) at /home/metap2/exec/readAux.pl line 66.
Use of uninitialized value $out0 in substitution (s///) at /home/metap2/exec/readAux.pl line 67.
Use of uninitialized value in transliteration (tr///) at /home/metap2/exec/readAux.pl line 68.
Use of uninitialized value $out0 in concatenation (.) or string at /home/metap2/exec/readAux.pl line...
Use of uninitialized value $max_length in numeric lt (<) at /home/metap2/exec/readAux.pl line 71.
-rw-rw-r-- 1 metap2 metap2 59349 Jun 16 16:15 .R.Rout
  adding: batchBoxplot.pdf (deflated 89%)
  adding: sample_description.csv (deflated 70%)
  adding: summary.csv (deflated 55%)
  adding: colsToMark.x.csv (deflated 83%)
  adding: phenotypes.csv (deflated 78%)
  adding: data_all.csv (deflated 65%)
  adding: processing_log.txt (deflated 72%)
  adding: options (deflated 40%)
  adding: colsToMark.csv (deflated 30%)
  adding: phenotypes_numeric.csv (deflated 78%)
  adding: cv.pdf (deflated 43%)
  adding: bonferroni.csv (deflated 20%)
  adding: rowsToMark.csv (deflated 72%)
  adding: metabNamesMapping.csv (deflated 79%)
  adding: out_params.txt (stored 0%)
  adding: input (deflated 73%)
  adding: data.csv (deflated 65%)
  adding: phenotypes.txt (deflated 80%)
  adding: pValuesForAllMetabolites__Batch.key.csv (deflated 76%)
  adding: phenotypes_for_QC.csv (deflated 86%)
  adding: histograms.pdf (deflated 89%)
  adding: barplots/PC.aa.C32.3_barplot.png (deflated 19%)
  adding: barplots/C16_barplot_AGE.png (deflated 14%)
  adding: barplots/PC.aa.C40.1_barplot_Genotype.png (deflated 23%)
  adding: barplots/PC.aa.C40.4_barplot.png (stored 0%)
  adding: barplots/C6..C4.1.DC._barplot_Radiation.png (deflated 19%)
  adding: barplots/Spermine_barplot_Radiation.png (deflated 30%)
  adding: barplots/C2_barplot_AGE.png (deflated 22%)
  adding: barplots/C7.DC_barplot_Radiation.png (deflated 17%)
  adding: barplots/C14.1.OH_barplot.png (deflated 18%)
  adding: barplots/PC.aa.C32.3_barplot_Genotype.png (deflated 16%)
  adding: barplots/C16_barplot_Radiation.png (deflated 15%)
  adding: barplots/C7.DC_barplot_AGE.png (deflated 16%)
  adding: barplots/Carnosine_barplot_AGE.png (deflated 15%)
  adding: barplots/C16.1.OH_barplot.map (deflated 82%)
  adding: barplots/lysoPC.a.C20.4_barplot_Radiation.png (deflated 22%)
  adding: barplots/PC.aa.C34.4_barplot.png (deflated 40%)
  adding: barplots/Glu_barplot_Radiation.png (deflated 22%)
  adding: barplots/C14_barplot_Genotype.png (deflated 19%)
  adding: barplots/lysoPC.a.C17.0_barplot_Radiation.png (deflated 25%)
  adding: barplots/Asp_barplot_AGE.png (deflated 23%)
  adding: barplots/total.DMA_barplot_AGE.png (deflated 28%)
  adding: barplots/C3.DC..C4.OH._barplot_Radiation.png (deflated 15%)
  adding: barplots/Met.SO_barplot_Genotype.png (deflated 32%)
  adding: barplots/Kynurenine_barplot_Genotype.png (deflated 16%)
  adding: barplots/Trp_barplot_AGE.png (deflated 26%)
  adding: barplots/lysoPC.a.C16.1_barplot_Radiation.png (deflated 23%)
  adding: barplots/Kynurenine_barplot_Radiation.png (deflated 15%)
  adding: barplots/lysoPC.a.C26.1_barplot_Radiation.png (deflated 17%)
  adding: barplots/C12.DC_barplot.map (deflated 82%)
  adding: barplots/lysoPC.a.C14.0_barplot_Genotype.png (deflated 35%)
  adding: barplots/C14.1.OH_barplot.map (deflated 82%)
  adding: barplots/C5.1_barplot_AGE.png (deflated 19%)
  adding: barplots/C6..C4.1.DC._barplot_Genotype.png (deflated 21%)
  adding: barplots/C3_barplot_AGE.png (deflated 29%)
  adding: barplots/C0_barplot_AGE.png (deflated 22%)
  adding: barplots/C6..C4.1.DC._barplot_AGE.png (deflated 17%)
  adding: barplots/c4.OH.Pro_barplot_Radiation.png (deflated 22%)
  adding: barplots/PC.aa.C38.1_barplot.png (deflated 37%)
  adding: barplots/C16.2.OH_barplot_Genotype.png (deflated 19%)
  adding: barplots/lysoPC.a.C26.0_barplot.map (deflated 83%)
  adding: barplots/Trp_barplot.map (deflated 84%)
  adding: barplots/C14.2.OH_barplot_AGE.png (deflated 15%)
  adding: barplots/C12.DC_barplot.png (deflated 24%)
  adding: barplots/C6.1_barplot_Radiation.png (deflated 16%)
  adding: barplots/DOPA_barplot_Genotype.png (deflated 32%)
  adding: barplots/C4_barplot.png (deflated 39%)
  adding: barplots/C18.1.OH_barplot.map (deflated 82%)
  adding: barplots/C5.M.DC_barplot.png (deflated 22%)
  adding: barplots/C12_barplot_Genotype.png (deflated 18%)
  adding: barplots/C18.1.OH_barplot_Radiation.png (deflated 17%)
  adding: barplots/lysoPC.a.C20.4_barplot.map (deflated 84%)
  adding: barplots/DOPA_barplot.map (deflated 84%)
  adding: barplots/Lys_barplot_AGE.png (deflated 22%)
  adding: barplots/Lys_barplot.map (deflated 84%)
  adding: barplots/C16.OH_barplot.map (deflated 82%)
  adding: barplots/PC.aa.C40.1_barplot_Radiation.png (deflated 20%)
  adding: barplots/PC.aa.C24.0_barplot_AGE.png (deflated 28%)
  adding: barplots/C10.2_barplot_Genotype.png (deflated 18%)
  adding: barplots/Spermine_barplot.png (deflated 40%)
  adding: barplots/lysoPC.a.C28.0_barplot_Radiation.png (deflated 29%)
  adding: barplots/Nitro.Tyr_barplot.png (deflated 30%)
  adding: barplots/t4.OH.Pro_barplot_Radiation.png (deflated 30%)
  adding: barplots/DOPA_barplot.png (deflated 38%)
  adding: barplots/C4_barplot_Genotype.png (deflated 33%)
  adding: barplots/PC.aa.C38.0_barplot_AGE.png (deflated 19%)
  adding: barplots/lysoPC.a.C16.1_barplot_AGE.png (deflated 24%)
  adding: barplots/C4.1_barplot_AGE.png (deflated 15%)
  adding: barplots/C18_barplot_Genotype.png (deflated 19%)
  adding: barplots/Glu_barplot_AGE.png (deflated 22%)
  adding: barplots/PC.aa.C32.3_barplot_Radiation.png (deflated 16%)
  adding: barplots/PC.aa.C40.2_barplot_AGE.png (deflated 30%)
  adding: barplots/C16.2_barplot.png (deflated 19%)
  adding: barplots/C4_barplot.map (deflated 83%)
  adding: barplots/C10_barplot.png (deflated 20%)
  adding: barplots/C3.OH_barplot.map (deflated 82%)
  adding: barplots/C18.2_barplot.map (deflated 82%)
  adding: barplots/PC.aa.C36.0_barplot_Radiation.png (deflated 25%)
  adding: barplots/C14.2_barplot_Radiation.png (deflated 16%)
  adding: barplots/Histamine_barplot_AGE.png (deflated 19%)
  adding: barplots/ADMA_barplot_AGE.png (deflated 16%)
  adding: barplots/lysoPC.a.C20.3_barplot_Genotype.png (deflated 32%)
  adding: barplots/C8_barplot_Genotype.png (deflated 18%)
  adding: barplots/C4.1_barplot_Genotype.png (deflated 17%)
  adding: barplots/C12.1_barplot.map (deflated 82%)
  adding: barplots/C3.1_barplot_Genotype.png (deflated 18%)
  adding: barplots/C10.1_barplot.png (deflated 20%)
  adding: barplots/C10_barplot_AGE.png (deflated 18%)
  adding: barplots/PC.aa.C40.2_barplot_Genotype.png (deflated 42%)
  adding: barplots/PC.aa.C36.5_barplot_Radiation.png (deflated 27%)
  adding: barplots/C18.1_barplot.map (deflated 82%)
  adding: barplots/C18.2_barplot_AGE.png (deflated 14%)
  adding: barplots/Met.SO_barplot.png (deflated 40%)
  adding: barplots/DOPA_barplot_Radiation.png (deflated 26%)
  adding: barplots/C5.OH..C3.DC.M._barplot_Genotype.png (deflated 15%)
  adding: barplots/C3.DC..C4.OH._barplot.map (deflated 82%)
  adding: barplots/lysoPC.a.C20.3_barplot_AGE.png (deflated 23%)
  adding: barplots/C5.M.DC_barplot_Genotype.png (deflated 17%)
  adding: barplots/PC.aa.C30.0_barplot_Genotype.png (deflated 32%)
  adding: barplots/PC.aa.C32.1_barplot.map (deflated 83%)
  adding: barplots/C10_barplot_Radiation.png (deflated 17%)
  adding: barplots/lysoPC.a.C26.0_barplot_Genotype.png (deflated 35%)
  adding: barplots/lysoPC.a.C20.3_barplot.map (deflated 83%)
  adding: barplots/C3_barplot.map (deflated 83%)
  adding: barplots/PC.aa.C36.5_barplot_Genotype.png (deflated 34%)
  adding: barplots/C3.DC..C4.OH._barplot.png (deflated 19%)
  adding: barplots/c4.OH.Pro_barplot_AGE.png (deflated 22%)
  adding: barplots/C7.DC_barplot.map (deflated 82%)
  adding: barplots/PC.aa.C30.0_barplot.map (deflated 83%)
  adding: barplots/PEA_barplot.png (deflated 31%)
  adding: barplots/alpha.AAA_barplot.png (deflated 38%)
  adding: barplots/PC.aa.C36.0_barplot.png (deflated 34%)
  adding: barplots/Met_barplot.png (deflated 30%)
  adding: barplots/C14.1_barplot.png (deflated 23%)
  adding: barplots/C12.1_barplot.png (deflated 17%)
  adding: barplots/C6..C4.1.DC._barplot.png (deflated 22%)
  adding: barplots/PC.aa.C32.1_barplot.png (deflated 36%)
  adding: barplots/Trp_barplot_Genotype.png (deflated 33%)
  adding: barplots/Taurine_barplot_Genotype.png (deflated 25%)
  adding: barplots/C14.2.OH_barplot_Radiation.png (deflated 18%)
  adding: barplots/C14.2_barplot.png (deflated 22%)
  adding: barplots/SDMA_barplot_AGE.png (deflated 22%)
  adding: barplots/PC.aa.C34.3_barplot_Radiation.png (deflated 22%)
  adding: barplots/lysoPC.a.C28.1_barplot_Radiation.png (deflated 20%)
  adding: barplots/C16.OH_barplot_Radiation.png (deflated 17%)
  adding: barplots/Met.SO_barplot_Radiation.png (deflated 29%)
  adding: barplots/C7.DC_barplot_Genotype.png (deflated 19%)
  adding: barplots/PC.aa.C32.2_barplot.png (deflated 50%)
  adding: barplots/C6.1_barplot.png (deflated 22%)
  adding: barplots/C18_barplot_AGE.png (deflated 16%)
  adding: barplots/Putrescine_barplot.map (deflated 83%)
  adding: barplots/C9_barplot_AGE.png (deflated 15%)
  adding: barplots/PEA_barplot_AGE.png (deflated 21%)
  adding: barplots/PC.aa.C38.3_barplot_AGE.png (deflated 24%)
  adding: barplots/lysoPC.a.C26.1_barplot.png (deflated 22%)
  adding: barplots/PC.aa.C32.1_barplot_Radiation.png (deflated 24%)
  adding: barplots/c4.OH.Pro_barplot.map (deflated 84%)
  adding: barplots/C12_barplot_Radiation.png (deflated 17%)
  adding: barplots/PC.aa.C36.6_barplot.map (deflated 84%)
  adding: barplots/lysoPC.a.C28.1_barplot.png (deflated 27%)
  adding: barplots/C5.1.DC_barplot_Radiation.png (deflated 17%)
  adding: barplots/C16.2.OH_barplot.map (deflated 82%)
  adding: barplots/C6.1_barplot_Genotype.png (deflated 18%)
  adding: barplots/lysoPC.a.C24.0_barplot.map (deflated 83%)
  adding: barplots/PC.aa.C38.6_barplot.png (deflated 30%)
  adding: barplots/C16.1.OH_barplot_Radiation.png (deflated 16%)
  adding: barplots/C14.1_barplot_Radiation.png (deflated 18%)
  adding: barplots/C5_barplot.png (deflated 22%)
  adding: barplots/PC.aa.C38.6_barplot_Genotype.png (deflated 25%)
  adding: barplots/c4.OH.Pro_barplot.png (deflated 30%)
  adding: barplots/C16.2.OH_barplot_AGE.png (deflated 16%)
  adding: barplots/C18_barplot.map (deflated 82%)
  adding: barplots/SDMA_barplot_Radiation.png (deflated 22%)
  adding: barplots/PC.aa.C30.2_barplot.map (deflated 82%)
  adding: barplots/PC.aa.C40.3_barplot_Genotype.png (deflated 36%)
  adding: barplots/C14_barplot_AGE.png (deflated 15%)
  adding: barplots/Putrescine_barplot_Radiation.png (deflated 20%)
  adding: barplots/Ac.Orn_barplot.map (deflated 84%)
  adding: barplots/PC.aa.C34.3_barplot_Genotype.png (deflated 25%)
  adding: barplots/lysoPC.a.C14.0_barplot_Radiation.png (deflated 29%)
  adding: barplots/C10.2_barplot.map (deflated 82%)
  adding: barplots/Spermidine_barplot_Genotype.png (deflated 36%)
  adding: barplots/C16.1_barplot.map (deflated 82%)
  adding: barplots/PC.aa.C40.3_barplot.png (deflated 48%)
  adding: barplots/PC.aa.C28.1_barplot.map (deflated 82%)
  adding: barplots/C16.1.OH_barplot.png (deflated 20%)
  adding: barplots/C14.2.OH_barplot_Genotype.png (deflated 19%)
  adding: barplots/PC.aa.C36.0_barplot_AGE.png (deflated 24%)
  adding: barplots/Dopamine_barplot.png (deflated 30%)
  adding: barplots/C5.DC..C6.OH._barplot.map (deflated 82%)
  adding: barplots/Serotonin_barplot_Radiation.png (deflated 19%)
  adding: barplots/C16.2_barplot_Radiation.png (deflated 14%)
  adding: barplots/C3.OH_barplot_AGE.png (deflated 16%)
  adding: barplots/Creatinine_barplot.png (deflated 36%)
  adding: barplots/C3.1_barplot_AGE.png (deflated 15%)
  adding: barplots/PC.aa.C34.3_barplot.map (deflated 84%)
  adding: barplots/PC.aa.C40.3_barplot_Radiation.png (deflated 29%)
  adding: barplots/C14.1.OH_barplot_Genotype.png (deflated 15%)
  adding: barplots/Nitro.Tyr_barplot_AGE.png (deflated 22%)
  adding: barplots/Kynurenine_barplot.png (deflated 17%)
  adding: barplots/PC.aa.C40.1_barplot.png (deflated 25%)
  adding: barplots/Met_barplot_Radiation.png (deflated 22%)
  adding: barplots/Dopamine_barplot_Genotype.png (deflated 25%)
  adding: barplots/Lys_barplot.png (deflated 30%)
  adding: barplots/total.DMA_barplot_Genotype.png (deflated 31%)
  adding: barplots/PC.aa.C36.0_barplot.map (deflated 84%)
  adding: barplots/C16.OH_barplot_AGE.png (deflated 17%)
  adding: barplots/lysoPC.a.C18.1_barplot_Genotype.png (deflated 25%)
  adding: barplots/PC.aa.C32.3_barplot.map (deflated 82%)
  adding: barplots/C14.2.OH_barplot.png (deflated 20%)
  adding: barplots/lysoPC.a.C14.0_barplot.png (deflated 38%)
  adding: barplots/C7.DC_barplot.png (deflated 19%)
  adding: barplots/PC.aa.C26.0_barplot.png (deflated 39%)
  adding: barplots/t4.OH.Pro_barplot.png (deflated 38%)
  adding: barplots/Taurine_barplot_Radiation.png (deflated 22%)
  adding: barplots/Kynurenine_barplot.map (deflated 82%)
  adding: barplots/C5.1.DC_barplot.map (deflated 82%)
  adding: barplots/C10.1_barplot_AGE.png (deflated 16%)
  adding: barplots/C5.1_barplot.png (deflated 23%)
  adding: barplots/PC.aa.C26.0_barplot_Radiation.png (deflated 23%)
  adding: barplots/C5.OH..C3.DC.M._barplot.png (deflated 21%)
  adding: barplots/lysoPC.a.C20.4_barplot_Genotype.png (deflated 25%)
  adding: barplots/C18.2_barplot_Genotype.png (deflated 17%)
  adding: barplots/PC.aa.C26.0_barplot.map (deflated 83%)
  adding: barplots/lysoPC.a.C20.3_barplot.png (deflated 37%)
  adding: barplots/Spermidine_barplot.map (deflated 83%)
  adding: barplots/Cit_barplot_Genotype.png (deflated 25%)
  adding: barplots/PC.aa.C26.0_barplot_AGE.png (deflated 26%)
  adding: barplots/C12.1_barplot_AGE.png (deflated 13%)
  adding: barplots/SDMA_barplot_Genotype.png (deflated 25%)
  adding: barplots/C3.DC..C4.OH._barplot_AGE.png (deflated 15%)
  adding: barplots/Histamine_barplot_Genotype.png (deflated 25%)
  adding: barplots/C14.1_barplot_Genotype.png (deflated 21%)
  adding: barplots/C9_barplot.map (deflated 82%)
  adding: barplots/Putrescine_barplot_Genotype.png (deflated 30%)
  adding: barplots/C18_barplot_Radiation.png (deflated 16%)
  adding: barplots/Glu_barplot.png (deflated 30%)
  adding: barplots/C18.1_barplot.png (deflated 28%)
  adding: barplots/PC.aa.C36.6_barplot_Radiation.png (deflated 30%)
  adding: barplots/C16.OH_barplot.png (deflated 21%)
  adding: barplots/C14.1.OH_barplot_Radiation.png (deflated 13%)
  adding: barplots/C16.1_barplot_Genotype.png (deflated 17%)
  adding: barplots/C5.1_barplot_Radiation.png (deflated 16%)
  adding: barplots/C16.2.OH_barplot_Radiation.png (deflated 15%)
  adding: barplots/Glu_barplot.map (deflated 84%)
  adding: barplots/C2_barplot.map (deflated 84%)
  adding: barplots/C16.1.OH_barplot_AGE.png (deflated 16%)
  adding: barplots/C3.1_barplot_Radiation.png (deflated 16%)
  adding: barplots/C12.DC_barplot_Radiation.png (deflated 16%)
  adding: barplots/PC.aa.C38.6_barplot.map (deflated 84%)
  adding: barplots/Cit_barplot_Radiation.png (deflated 22%)
  adding: barplots/PC.aa.C38.1_barplot_Genotype.png (deflated 28%)
  adding: barplots/lysoPC.a.C14.0_barplot.map (deflated 84%)
  adding: barplots/C12.1_barplot_Radiation.png (deflated 14%)
  adding: barplots/PC.aa.C40.2_barplot.png (deflated 49%)
  adding: barplots/C14.2.OH_barplot.map (deflated 82%)
  adding: barplots/Carnosine_barplot.map (deflated 82%)
  adding: barplots/C0_barplot_Radiation.png (deflated 22%)
  adding: barplots/PC.aa.C32.2_barplot_AGE.png (deflated 32%)
  adding: barplots/C5_barplot.map (deflated 82%)
  adding: barplots/PC.aa.C32.3_barplot_AGE.png (deflated 15%)
  adding: barplots/C18_barplot.png (deflated 21%)
  adding: barplots/total.DMA_barplot.map (deflated 84%)
  adding: barplots/SDMA_barplot.map (deflated 84%)
  adding: barplots/Histamine_barplot.map (deflated 83%)
  adding: barplots/lysoPC.a.C17.0_barplot.png (deflated 34%)
  adding: barplots/C14.2_barplot_Genotype.png (deflated 16%)
  adding: barplots/C18.1.OH_barplot.png (deflated 20%)
  adding: barplots/C5.OH..C3.DC.M._barplot_AGE.png (deflated 14%)
  adding: barplots/lysoPC.a.C26.1_barplot_Genotype.png (deflated 22%)
  adding: barplots/C5_barplot_Genotype.png (deflated 18%)
  adding: barplots/lysoPC.a.C24.0_barplot_Radiation.png (deflated 25%)
  adding: barplots/C8_barplot.map (deflated 82%)
  adding: barplots/t4.OH.Pro_barplot_AGE.png (deflated 29%)
  adding: barplots/C8_barplot_AGE.png (deflated 17%)
  adding: barplots/C2_barplot_Radiation.png (deflated 22%)
  adding: barplots/Nitro.Tyr_barplot_Radiation.png (deflated 22%)
  adding: barplots/lysoPC.a.C20.3_barplot_Radiation.png (deflated 23%)
  adding: barplots/DOPA_barplot_AGE.png (deflated 25%)
  adding: barplots/PC.aa.C30.2_barplot_Genotype.png (deflated 15%)
  adding: barplots/Trp_barplot.png (deflated 35%)
  adding: barplots/C14_barplot_Radiation.png (deflated 16%)
  adding: barplots/C16_barplot_Genotype.png (deflated 16%)
  adding: barplots/PC.aa.C32.2_barplot_Radiation.png (deflated 34%)
  adding: barplots/Serotonin_barplot_Genotype.png (deflated 19%)
  adding: barplots/C3.OH_barplot_Genotype.png (deflated 18%)
  adding: barplots/Histamine_barplot.png (deflated 28%)
  adding: barplots/C14.1_barplot.map (deflated 82%)
  adding: barplots/Creatinine_barplot.map (deflated 83%)
  adding: barplots/PC.aa.C38.1_barplot.map (deflated 83%)
  adding: barplots/PC.aa.C38.0_barplot_Genotype.png (deflated 24%)
  adding: barplots/Asp_barplot_Genotype.png (deflated 25%)
  adding: barplots/PC.aa.C32.1_barplot_Genotype.png (deflated 29%)
  adding: barplots/alpha.AAA_barplot_Radiation.png (deflated 28%)
  adding: barplots/C6.1_barplot_AGE.png (deflated 16%)
  adding: barplots/Serotonin_barplot.png (deflated 24%)
  adding: barplots/C18.2_barplot_Radiation.png (deflated 15%)
  adding: barplots/PC.aa.C32.0_barplot_Genotype.png (deflated 25%)
  adding: barplots/Met_barplot_Genotype.png (deflated 25%)
  adding: barplots/lysoPC.a.C24.0_barplot_AGE.png (deflated 25%)
  adding: barplots/PC.aa.C36.6_barplot_AGE.png (deflated 30%)
  adding: barplots/C14.2_barplot.map (deflated 82%)
  adding: barplots/C3.DC..C4.OH._barplot_Genotype.png (deflated 17%)
  adding: barplots/PC.aa.C38.1_barplot_Radiation.png (deflated 26%)
  adding: barplots/C12_barplot.png (deflated 21%)
  adding: barplots/C6.1_barplot.map (deflated 82%)
  adding: barplots/PC.aa.C30.0_barplot.png (deflated 36%)
  adding: barplots/C5_barplot_AGE.png (deflated 18%)
  adding: barplots/C14.2_barplot_AGE.png (deflated 14%)
  adding: barplots/C14_barplot.png (deflated 22%)
  adding: barplots/PC.aa.C36.6_barplot.png (deflated 40%)
  adding: barplots/PC.aa.C34.3_barplot.png (deflated 30%)
  adding: barplots/C0_barplot.png (deflated 30%)
  adding: barplots/PC.aa.C38.6_barplot_Radiation.png (deflated 22%)
  adding: barplots/C12.DC_barplot_Genotype.png (deflated 21%)
  adding: barplots/PC.aa.C38.3_barplot.png (deflated 34%)
  adding: barplots/Spermine_barplot_AGE.png (deflated 30%)
  adding: barplots/C5.M.DC_barplot_Radiation.png (deflated 15%)
  adding: barplots/lysoPC.a.C16.1_barplot.png (deflated 32%)
  adding: barplots/C14.1.OH_barplot_AGE.png (deflated 13%)
  adding: barplots/PC.aa.C32.0_barplot_Radiation.png (deflated 22%)
  adding: barplots/Nitro.Tyr_barplot_Genotype.png (deflated 25%)
  adding: barplots/Carnosine_barplot_Radiation.png (deflated 16%)
  adding: barplots/PC.aa.C32.2_barplot.map (deflated 83%)
  adding: barplots/lysoPC.a.C14.0_barplot_AGE.png (deflated 29%)
  adding: barplots/PC.aa.C34.3_barplot_AGE.png (deflated 22%)
  adding: barplots/PC.aa.C34.4_barplot_AGE.png (deflated 27%)
  adding: barplots/alpha.AAA_barplot_Genotype.png (deflated 31%)
  adding: barplots/C18.1.OH_barplot_AGE.png (deflated 15%)
  adding: barplots/lysoPC.a.C17.0_barplot.map (deflated 83%)
  adding: barplots/Taurine_barplot.png (deflated 30%)
  adding: barplots/Putrescine_barplot_AGE.png (deflated 20%)
  adding: barplots/C4.1_barplot_Radiation.png (deflated 16%)
  adding: barplots/C3_barplot.png (deflated 38%)
  adding: barplots/C12.1_barplot_Genotype.png (deflated 15%)
  adding: barplots/lysoPC.a.C24.0_barplot.png (deflated 35%)
  adding: barplots/PC.aa.C38.0_barplot.png (deflated 30%)
  adding: barplots/PC.aa.C30.0_barplot_Radiation.png (deflated 28%)
  adding: barplots/Lys_barplot_Genotype.png (deflated 25%)
  adding: barplots/Cit_barplot.png (deflated 30%)
  adding: barplots/Ac.Orn_barplot_Radiation.png (deflated 27%)
  adding: barplots/Ac.Orn_barplot_AGE.png (deflated 29%)
  adding: barplots/C10.2_barplot_Radiation.png (deflated 17%)
  adding: barplots/ADMA_barplot.png (deflated 18%)
  adding: barplots/C5.1.DC_barplot.png (deflated 21%)
  adding: barplots/PC.aa.C40.2_barplot.map (deflated 83%)
  adding: barplots/C10.2_barplot_AGE.png (deflated 17%)
  adding: barplots/Nitro.Tyr_barplot.map (deflated 84%)
  adding: barplots/PC.aa.C30.2_barplot_Radiation.png (deflated 15%)
  adding: barplots/PC.aa.C38.0_barplot.map (deflated 84%)
  adding: barplots/Dopamine_barplot.map (deflated 84%)
  adding: barplots/C5_barplot_Radiation.png (deflated 18%)
  adding: barplots/PC.aa.C24.0_barplot.png (deflated 39%)
  adding: barplots/C16.1.OH_barplot_Genotype.png (deflated 17%)
  adding: barplots/C5.OH..C3.DC.M._barplot.map (deflated 82%)
  adding: barplots/C18.1_barplot_AGE.png (deflated 19%)
  adding: barplots/C12_barplot.map (deflated 82%)
  adding: barplots/Glu_barplot_Genotype.png (deflated 25%)
  adding: barplots/Dopamine_barplot_AGE.png (deflated 22%)
  adding: barplots/C16.1_barplot_Radiation.png (deflated 17%)
  adding: barplots/PC.aa.C28.1_barplot_Radiation.png (deflated 14%)
  adding: barplots/lysoPC.a.C26.0_barplot_AGE.png (deflated 30%)
  adding: barplots/PC.aa.C28.1_barplot_Genotype.png (deflated 17%)
  adding: barplots/PC.aa.C34.4_barplot.map (deflated 84%)
  adding: barplots/PC.aa.C38.3_barplot_Genotype.png (deflated 29%)
  adding: barplots/total.DMA_barplot_Radiation.png (deflated 29%)
  adding: barplots/Dopamine_barplot_Radiation.png (deflated 22%)
  adding: barplots/PC.aa.C34.4_barplot_Radiation.png (deflated 27%)
  adding: barplots/lysoPC.a.C24.0_barplot_Genotype.png (deflated 28%)
  adding: barplots/Ac.Orn_barplot_Genotype.png (deflated 35%)
  adding: barplots/C10.1_barplot.map (deflated 82%)
  adding: barplots/lysoPC.a.C18.1_barplot_AGE.png (deflated 22%)
  adding: barplots/C12.DC_barplot_AGE.png (deflated 16%)
  adding: barplots/Met.SO_barplot.map (deflated 83%)
  adding: barplots/C16_barplot.png (deflated 18%)
  adding: barplots/C10_barplot_Genotype.png (deflated 19%)
  adding: barplots/C4.1_barplot.png (deflated 20%)
  adding: barplots/lysoPC.a.C28.1_barplot_Genotype.png (deflated 25%)
  adding: barplots/t4.OH.Pro_barplot_Genotype.png (deflated 35%)
  adding: barplots/PEA_barplot_Genotype.png (deflated 28%)
  adding: barplots/lysoPC.a.C28.0_barplot.png (deflated 41%)
  adding: barplots/C10.2_barplot.png (deflated 19%)
  adding: barplots/PC.aa.C34.4_barplot_Genotype.png (deflated 31%)
  adding: barplots/C3_barplot_Genotype.png (deflated 33%)
  adding: barplots/C3.1_barplot.png (deflated 21%)
  adding: barplots/PC.aa.C32.1_barplot_AGE.png (deflated 24%)
  adding: barplots/Serotonin_barplot_AGE.png (deflated 17%)
  adding: barplots/PC.aa.C26.0_barplot_Genotype.png (deflated 28%)
  adding: barplots/C16.2_barplot_Genotype.png (deflated 17%)
  adding: barplots/t4.OH.Pro_barplot.map (deflated 84%)
  adding: barplots/C2_barplot.png (deflated 30%)
  adding: barplots/PC.aa.C40.1_barplot_AGE.png (deflated 20%)
  adding: barplots/lysoPC.a.C16.1_barplot.map (deflated 83%)
  adding: barplots/PC.aa.C38.1_barplot_AGE.png (deflated 25%)
  adding: barplots/ADMA_barplot_Radiation.png (deflated 16%)
  adding: barplots/PC.aa.C40.3_barplot_AGE.png (deflated 33%)
  adding: barplots/lysoPC.a.C26.1_barplot_AGE.png (deflated 17%)
  adding: barplots/Putrescine_barplot.png (deflated 35%)
  adding: barplots/PC.aa.C30.2_barplot.png (deflated 17%)
  adding: barplots/PC.aa.C28.1_barplot.png (deflated 21%)
  adding: barplots/C5.DC..C6.OH._barplot.png (deflated 17%)
  adding: barplots/C16.OH_barplot_Genotype.png (deflated 16%)
  adding: barplots/C16.2_barplot_AGE.png (deflated 16%)
  adding: barplots/Spermine_barplot_Genotype.png (deflated 33%)
  adding: barplots/C9_barplot.png (deflated 19%)
  adding: barplots/C18.2_barplot.png (deflated 19%)
  adding: barplots/Met.SO_barplot_AGE.png (deflated 29%)
  adding: barplots/ADMA_barplot_Genotype.png (deflated 16%)
  adding: barplots/lysoPC.a.C16.1_barplot_Genotype.png (deflated 28%)
  adding: barplots/C5.1.DC_barplot_Genotype.png (deflated 19%)
  adding: barplots/C9_barplot_Genotype.png (deflated 18%)
  adding: barplots/PC.aa.C36.5_barplot.map (deflated 83%)
  adding: barplots/SDMA_barplot.png (deflated 30%)
  adding: barplots/c4.OH.Pro_barplot_Genotype.png (deflated 25%)
  adding: barplots/lysoPC.a.C17.0_barplot_Genotype.png (deflated 27%)
  adding: barplots/Creatinine_barplot_Radiation.png (deflated 28%)
  adding: barplots/lysoPC.a.C26.0_barplot.png (deflated 41%)
  adding: barplots/lysoPC.a.C18.1_barplot_Radiation.png (deflated 22%)
  adding: barplots/Cit_barplot.map (deflated 84%)
  adding: barplots/PC.aa.C38.0_barplot_Radiation.png (deflated 20%)
  adding: barplots/Trp_barplot_Radiation.png (deflated 27%)
  adding: barplots/PC.aa.C36.5_barplot_AGE.png (deflated 27%)
  adding: barplots/C18.1_barplot_Radiation.png (deflated 23%)
  adding: barplots/Creatinine_barplot_Genotype.png (deflated 30%)
  adding: barplots/Taurine_barplot.map (deflated 84%)
  adding: barplots/lysoPC.a.C28.0_barplot_Genotype.png (deflated 35%)
  adding: barplots/PC.aa.C40.1_barplot.map (deflated 84%)
  adding: barplots/PC.aa.C32.0_barplot_AGE.png (deflated 22%)
  adding: barplots/Spermidine_barplot_AGE.png (deflated 28%)
  adding: barplots/C16.2.OH_barplot.png (deflated 22%)
  adding: barplots/PC.aa.C38.3_barplot.map (deflated 84%)
  adding: barplots/lysoPC.a.C28.1_barplot.map (deflated 83%)
  adding: barplots/Kynurenine_barplot_AGE.png (deflated 15%)
  adding: barplots/C10.1_barplot_Genotype.png (deflated 17%)
  adding: barplots/C8_barplot.png (deflated 21%)
  adding: barplots/C0_barplot_Genotype.png (deflated 25%)
  adding: barplots/PC.aa.C30.0_barplot_AGE.png (deflated 27%)
  adding: barplots/C4_barplot_Radiation.png (deflated 24%)
  adding: barplots/C3.1_barplot.map (deflated 82%)
  adding: barplots/C5.DC..C6.OH._barplot_Genotype.png (deflated 15%)
  adding: barplots/C5.1_barplot.map (deflated 82%)
  adding: barplots/C5.OH..C3.DC.M._barplot_Radiation.png (deflated 15%)
  adding: barplots/lysoPC.a.C26.0_barplot_Radiation.png (deflated 28%)
  adding: barplots/Cit_barplot_AGE.png (deflated 22%)
  adding: barplots/Asp_barplot_Radiation.png (deflated 22%)
  adding: barplots/C4.1_barplot.map (deflated 82%)
  adding: barplots/Creatinine_barplot_AGE.png (deflated 27%)
  adding: barplots/Met_barplot_AGE.png (deflated 22%)
  adding: barplots/Serotonin_barplot.map (deflated 82%)
  adding: barplots/PC.aa.C30.2_barplot_AGE.png (deflated 15%)
  adding: barplots/lysoPC.a.C28.0_barplot.map (deflated 83%)
  adding: barplots/Spermine_barplot.map (deflated 84%)
  adding: barplots/C9_barplot_Radiation.png (deflated 15%)
  adding: barplots/ADMA_barplot.map (deflated 82%)
  adding: barplots/C18.1_barplot_Genotype.png (deflated 25%)
  adding: barplots/lysoPC.a.C18.1_barplot.png (deflated 30%)
  adding: barplots/PC.aa.C40.2_barplot_Radiation.png (deflated 31%)
  adding: barplots/PC.aa.C24.0_barplot.map (deflated 84%)
  adding: barplots/Histamine_barplot_Radiation.png (deflated 19%)
  adding: barplots/C0_barplot.map (deflated 84%)
  adding: barplots/PC.aa.C28.1_barplot_AGE.png (deflated 16%)
  adding: barplots/C5.DC..C6.OH._barplot_AGE.png (deflated 14%)
  adding: barplots/C10.1_barplot_Radiation.png (deflated 16%)
  adding: barplots/PC.aa.C36.6_barplot_Genotype.png (deflated 32%)
  adding: barplots/C5.M.DC_barplot_AGE.png (deflated 15%)
  adding: barplots/C14.1_barplot_AGE.png (deflated 17%)
  adding: barplots/PC.aa.C24.0_barplot_Genotype.png (deflated 33%)
  adding: barplots/Spermidine_barplot.png (deflated 40%)
  adding: barplots/PC.aa.C32.2_barplot_Genotype.png (deflated 40%)
  adding: barplots/total.DMA_barplot.png (deflated 37%)
  adding: barplots/PC.aa.C38.3_barplot_Radiation.png (deflated 24%)
  adding: barplots/lysoPC.a.C28.1_barplot_AGE.png (deflated 20%)
  adding: barplots/Carnosine_barplot.png (deflated 22%)
  adding: barplots/lysoPC.a.C20.4_barplot_AGE.png (deflated 22%)
  adding: barplots/C2_barplot_Genotype.png (deflated 25%)
  adding: barplots/Ac.Orn_barplot.png (deflated 38%)
  adding: barplots/C4_barplot_AGE.png (deflated 26%)
  adding: barplots/lysoPC.a.C20.4_barplot.png (deflated 30%)
  adding: barplots/C6..C4.1.DC._barplot.map (deflated 82%)
  adding: barplots/Taurine_barplot_AGE.png (deflated 22%)
  adding: barplots/C5.1.DC_barplot_AGE.png (deflated 17%)
  adding: barplots/lysoPC.a.C28.0_barplot_AGE.png (deflated 29%)
  adding: barplots/Carnosine_barplot_Genotype.png (deflated 19%)
  adding: barplots/C18.1.OH_barplot_Genotype.png (deflated 20%)
  adding: barplots/Met_barplot.map (deflated 84%)
  adding: barplots/C5.M.DC_barplot.map (deflated 82%)
  adding: barplots/Asp_barplot.map (deflated 84%)
  adding: barplots/alpha.AAA_barplot_AGE.png (deflated 28%)
  adding: barplots/alpha.AAA_barplot.map (deflated 84%)
  adding: barplots/PEA_barplot.map (deflated 82%)
  adding: barplots/PC.aa.C32.0_barplot.png (deflated 30%)
  adding: barplots/C16.1_barplot_AGE.png (deflated 14%)
  adding: barplots/C12_barplot_AGE.png (deflated 16%)
  adding: barplots/C3.OH_barplot_Radiation.png (deflated 15%)
  adding: barplots/C3.OH_barplot.png (deflated 18%)
  adding: barplots/PC.aa.C38.6_barplot_AGE.png (deflated 22%)
  adding: barplots/PC.aa.C40.3_barplot.map (deflated 83%)
  adding: barplots/C16.1_barplot.png (deflated 19%)
  adding: barplots/C8_barplot_Radiation.png (deflated 16%)
  adding: barplots/lysoPC.a.C18.1_barplot.map (deflated 84%)
  adding: barplots/C16_barplot.map (deflated 82%)
  adding: barplots/PC.aa.C36.5_barplot.png (deflated 37%)
  adding: barplots/Lys_barplot_Radiation.png (deflated 22%)
  adding: barplots/PC.aa.C32.0_barplot.map (deflated 84%)
  adding: barplots/C14_barplot.map (deflated 82%)
  adding: barplots/PEA_barplot_Radiation.png (deflated 24%)
  adding: barplots/PC.aa.C24.0_barplot_Radiation.png (deflated 29%)
  adding: barplots/C5.DC..C6.OH._barplot_Radiation.png (deflated 16%)
  adding: barplots/C5.1_barplot_Genotype.png (deflated 20%)
  adding: barplots/C10_barplot.map (deflated 82%)
  adding: barplots/Spermidine_barplot_Radiation.png (deflated 29%)
  adding: barplots/lysoPC.a.C17.0_barplot_AGE.png (deflated 24%)
  adding: barplots/C16.2_barplot.map (deflated 82%)
  adding: barplots/Asp_barplot.png (deflated 31%)
  adding: barplots/C3_barplot_Radiation.png (deflated 30%)
  adding: barplots/PC.aa.C36.0_barplot_Genotype.png (deflated 28%)
  adding: barplots/lysoPC.a.C26.1_barplot.map (deflated 82%)
  adding: data_all_beforeCheck.csv (deflated 78%)
  adding: data_beforeCheck.csv (deflated 77%)
  adding: phenotypes_nominal.csv (deflated 78%)
  adding: aux.txt (stored 0%)
  adding: server_log.txt (deflated 88%)
  adding: keggMapping.csv (deflated 84%)
  adding: phenotypes_beforeCheck.csv (deflated 85%)
  adding: refBatchBoxplot.pdf (deflated 93%)
FINISHED with /home/metap2/exec/process_metaP_data.R
+ echo 'these are the files that are now here:'
these are the files that are now here:
+ ls -ltra
total 5832
-rw-r--r--    1 www-data www-data  358821 Jun 16 16:12 input.tmp
-rw-r--r--    1 www-data www-data    1979 Jun 16 16:12 phenotypes.txt.tmp
-rw-r--r--    1 www-data www-data  358821 Jun 16 16:12 input
-rw-r--r--    1 www-data www-data    1979 Jun 16 16:12 phenotypes.txt
-rw-r--r--    1 www-data www-data       0 Jun 16 16:12 aux.txt
-rw-r--r--    1 www-data www-data     240 Jun 16 16:12 options
-rwxr-xr-x    1 www-data www-data     603 Jun 16 16:12 metaPjob.cmd
drwxrwxrwx 1908 metap2   metap2    212992 Jun 16 16:13 ..
-rw-rw-r--    1 metap2   metap2         1 Jun 16 16:13 out_params.txt
-rw-rw-r--    1 metap2   metap2    358263 Jun 16 16:13 input_4R
-rw-rw-r--    1 metap2   metap2      8271 Jun 16 16:13 keggMapping.csv
-rw-rw-r--    1 metap2   metap2     12372 Jun 16 16:13 metabNamesMapping.csv
-rw-rw-r--    1 metap2   metap2    164771 Jun 16 16:13 data_beforeCheck.csv
-rw-rw-r--    1 metap2   metap2    169018 Jun 16 16:13 data_all_beforeCheck.csv
-rw-rw-r--    1 metap2   metap2      6021 Jun 16 16:13 phenotypes_beforeCheck.csv
-rw-rw-r--    1 metap2   metap2       813 Jun 16 16:13 cv.pdf
-rw-rw-r--    1 metap2   metap2         2 Jun 16 16:13 cv.ok
-rw-rw-r--    1 metap2   metap2    289737 Jun 16 16:13 refBatchBoxplot.pdf
-rw-rw-r--    1 metap2   metap2      3006 Jun 16 16:13 pValuesForAllMetabolites__Batch.key.csv
-rw-rw-r--    1 metap2   metap2       115 Jun 16 16:13 bonferroni.csv
-rw-rw-r--    1 metap2   metap2    334947 Jun 16 16:13 batchBoxplot.pdf
-rw-rw-r--    1 metap2   metap2       555 Jun 16 16:13 rowsToMark.csv
-rw-rw-r--    1 metap2   metap2      8142 Jun 16 16:13 colsToMark.x.csv
-rw-rw-r--    1 metap2   metap2        98 Jun 16 16:13 colsToMark.csv
-rw-rw-r--    1 metap2   metap2      3985 Jun 16 16:13 phenotypes_for_QC.csv
-rw-rw-r--    1 metap2   metap2      1893 Jun 16 16:13 phenotypes.csv
-rw-rw-r--    1 metap2   metap2     95490 Jun 16 16:13 data.csv
-rw-rw-r--    1 metap2   metap2      1099 Jun 16 16:13 sample_description.csv
-rw-rw-r--    1 metap2   metap2     97391 Jun 16 16:13 data_all.csv
-rw-rw-r--    1 metap2   metap2      1893 Jun 16 16:13 phenotypes_nominal.csv
-rw-rw-r--    1 metap2   metap2      1494 Jun 16 16:13 phenotypes_numeric.csv
-rw-rw-r--    1 metap2   metap2     19190 Jun 16 16:13 summary.csv
-rw-rw-r--    1 metap2   metap2   1573869 Jun 16 16:13 histograms.pdf
drwxrwxrwx    2 www-data www-data   28672 Jun 16 16:15 barplots
-rw-rw-r--    1 metap2   metap2     59349 Jun 16 16:15 .R.Rout
-rw-rw-r--    1 metap2   metap2      5475 Jun 16 16:15 processing_log.txt
-rw-rw-r--    1 metap2   metap2   1660917 Jun 16 16:15 download.zip
drwxrwxrwx    3 www-data www-data    4096 Jun 16 16:15 .
-rw-rw-r--    1 metap2   metap2     32564 Jun 16 16:15 server_log.txt
+ set -
Finishing METAP SERVER


-----

OPTION:FORMAT:data format: ' absoluteIDQ ' OPTION:MISSING:treat LOD/out of quant. data as missing: ' n ' OPTION:OUTLIER:drop outliers : ' n ' OPTION:REFERENCE:drop reference samples : ' n ' OPTION:DEL_METABS:drop metabolites with cv > 0.25 : ' n ' OPTION:RATIOS:calculate metabolite ratios : ' n ' AUX:Barplots of each metabolite class have equal y axis: TRUE Fileformat MetIQ - original - win-lin Read MetIQ dataset with 449 columns and 88 rows AbsoluteIDQ data format EXTRACT:No validity information available Keeping data annotated as non-valid EXTRACT: 88 samples and 430 metabolites extracted AbsoluteIDQ data format EXTRACT:No validity information available Keeping data annotated as non-valid PHENOTYPES_UPLOAD:Found 79 matched lines with 3 phenotypes specified
PHENOTYPES_UPLOAD:Found AGE Radiation Genotype as non-data quality phenotypes
REPLICATES:Added sample description for info on replicates for data quality checks BATCHES:Added Plate.bar.code as a phenotypes for data quality checks Wrote machted dataset to data_all_beforeCheck.csv NA_COLS:For following metabolites all values are missing: C0.Status C10.Status C10.1.Status C10.2.Status C12.Status C12.DC.Status C12.1.Status C14.Status C14.1.Status C14.1.OH.Status C14.2.Status C14.2.OH.Status C16.Status C16.OH.Status C16.1.Status C16.1.OH.Status C16.2.Status C16.2.OH.Status C18.Status C18.1.Status C18.1.OH.Status C18.2.Status C2.Status C3.Status C5.OH..C3.DC.M..Status C3.OH.Status C3.1.Status C4.Status C3.DC..C4.OH..Status C4.1.Status C5.Status C5.DC..C6.OH..Status C5.M.DC.Status C5.1.Status C5.1.DC.Status C6..C4.1.DC..Status C6.1.Status C7.DC.Status C8.Status C9.Status Ala.Status Arg.Status Asn.Status Asp.Status Cit.Status Gln.Status Glu.Status Gly.Status His.Status Ile.Status Leu.Status Lys.Status Met.Status Orn.Status Phe.Status Pro.Status Ser.Status Thr.Status Trp.Status Tyr.Status Val.Status Ac.Orn.Status ADMA.Status alpha.AAA.Status c4.OH.Pro.Status Carnosine.Status Creatinine.Status DOPA.Status Dopamine.Status Histamine.Status Kynurenine.Status Met.SO.Status Nitro.Tyr.Status PEA.Status Putrescine.Status SDMA.Status Serotonin.Status Spermidine.Status Spermine.Status t4.OH.Pro.Status Taurine.Status total.DMA.Status lysoPC.a.C14.0.Status lysoPC.a.C16.0.Status lysoPC.a.C16.1.Status lysoPC.a.C17.0.Status lysoPC.a.C18.0.Status lysoPC.a.C18.1.Status lysoPC.a.C18.2.Status lysoPC.a.C20.3.Status lysoPC.a.C20.4.Status lysoPC.a.C24.0.Status lysoPC.a.C26.0.Status lysoPC.a.C26.1.Status lysoPC.a.C28.0.Status lysoPC.a.C28.1.Status PC.aa.C24.0.Status PC.aa.C26.0.Status PC.aa.C28.1.Status PC.aa.C30.0.Status PC.aa.C30.2.Status PC.aa.C32.0.Status PC.aa.C32.1.Status PC.aa.C32.2.Status PC.aa.C32.3.Status PC.aa.C34.1.Status PC.aa.C34.2.Status PC.aa.C34.3.Status PC.aa.C34.4.Status PC.aa.C36.0.Status PC.aa.C36.1.Status PC.aa.C36.2.Status PC.aa.C36.3.Status PC.aa.C36.4.Status PC.aa.C36.5.Status PC.aa.C36.6.Status PC.aa.C38.0.Status PC.aa.C38.1.Status PC.aa.C38.3.Status PC.aa.C38.4.Status PC.aa.C38.5.Status PC.aa.C38.6.Status PC.aa.C40.1.Status PC.aa.C40.2.Status PC.aa.C40.3.Status PC.aa.C40.4.Status PC.aa.C40.5.Status PC.aa.C40.6.Status PC.aa.C42.0.Status PC.aa.C42.1.Status PC.aa.C42.2.Status PC.aa.C42.4.Status PC.aa.C42.5.Status PC.aa.C42.6.Status PC.ae.C30.0.Status PC.ae.C30.1.Status PC.ae.C30.2.Status PC.ae.C32.1.Status PC.ae.C32.2.Status PC.ae.C34.0.Status PC.ae.C34.1.Status PC.ae.C34.2.Status PC.ae.C34.3.Status PC.ae.C36.0.Status PC.ae.C36.1.Status PC.ae.C36.2.Status PC.ae.C36.3.Status PC.ae.C36.4.Status PC.ae.C36.5.Status PC.ae.C38.0.Status PC.ae.C38.1.Status PC.ae.C38.2.Status PC.ae.C38.3.Status PC.ae.C38.4.Status PC.ae.C38.5.Status PC.ae.C38.6.Status PC.ae.C40.1.Status PC.ae.C40.2.Status PC.ae.C40.3.Status PC.ae.C40.4.Status PC.ae.C40.5.Status PC.ae.C40.6.Status PC.ae.C42.0.Status PC.ae.C42.1.Status PC.ae.C42.2.Status PC.ae.C42.3.Status PC.ae.C42.4.Status PC.ae.C42.5.Status PC.ae.C44.3.Status PC.ae.C44.4.Status PC.ae.C44.5.Status PC.ae.C44.6.Status SM..OH..C14.1.Status SM..OH..C16.1.Status SM..OH..C22.1.Status SM..OH..C22.2.Status SM..OH..C24.1.Status SM.C16.0.Status SM.C16.1.Status SM.C18.0.Status SM.C18.1.Status SM.C20.2.Status SM.C22.3.Status SM.C24.0.Status SM.C24.1.Status SM.C26.0.Status SM.C26.1.Status H1.Status X.C2.C3....C0.Status AAA.Status C2...C0.Status CPT.I.ratio.Status MUFA..PC..Status MUFA..PC....SFA..PC..Status Orn...Arg.Status PUFA..PC..Status PUFA..PC....MUFA..PC..Status PUFA..PC....SFA..PC..Status SFA..PC..Status Total..PC.SM..Status Total.AC...C0.Status Total.AC.DC...Total.AC.Status Total.AC.OH...Total.AC.Status Total.lysoPC.Status Total.lysoPC...Total.PC.Status Total.PC.Status Total.PC.aa.Status Total.PC.ae.Status Total.SM.Status Total.SM...Total..SM.PC..Status Total.SM...Total.PC.Status Total.SM.non.OH.Status Total.SM.OH.Status Total.SM.OH...Total.SM.non.OH.Status Tyr...Phe.Status AAA MUFA..PC. PUFA..PC. PUFA..PC....SFA..PC. Total..PC.SM. Total.lysoPC Total.PC Total.PC.aa . Has been deleted NA_ROWS:For following samples all values are missing: NA NA NA . Has been deleted Boxplots generated No extreme outliers identified No extreme outliers identified 79 samples and 207 metabolites in checked data set Wrote machted dataset to data_all.csv Phenotype AGE is nominal Phenotype Radiation is numeric Phenotype Radiation added to nominal phenotypes also Phenotype Genotype is nominal Phenotype Genotype added to numeric phenotypes also Wrote summary.csv file 154 Distribution plots generated






KEGG Data is provided by the Kanehisa Laboratories for academic use. Any commercial use of KEGG data requires a license agreement from Pathway Solutions Inc.
The Helmholtz Zentrum München imprint applies.

This page is maintained by Gabi Kastenmüller and Werner Römisch-Margl.
Last modification: 28 December 2009

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