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JobID: 17080815443126613

***  MH all samples TIC  ***

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Running METAP SERVER
Tue Aug  8 15:45:01 CEST 2017
ID=17080815443126613
/home/metap2/exec:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
/home/metap2/data
+ echo 'we are here'
we are here
+ pwd
/home/metap2/public_html/users/17080815443126613
+ hostname
metap
+ uname -a
Linux metap 4.4.0-87-generic #110-Ubuntu SMP Tue Jul 18 12:55:35 UTC 2017 x86_64 x86_64 x86_64 GNU/L...
+ echo 'this is the environment'
this is the environment
+ env
RATIOS=n
OUTLIER=n
MISSING=n
DATADIR=/home/metap2/data
SHELL=/bin/sh
JOBID=MH all samples TIC
REFERENCE=n
PATH=/home/metap2/exec:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
PWD=/home/metap2/public_html/users/17080815443126613
PRIVAT=0
LANG=en_US.UTF-8
SHLVL=1
HOME=/home/metap2
ID=17080815443126613
DEL_METABS=n
FORMAT=csv
LOGNAME=metap2
EMAIL=unknown
USERID=unknown
DEVELOPT=
_=/usr/bin/env
+ echo 'this is a first R script that works on the input data'
this is a first R script that works on the input data
+ '[' '' = werner ']'
+ '[' '' = karsten ']'
+ '[' '' = gabi ']'
+ '[' '' = elisabeth ']'
+ process_metaP_data.R
RUNNING /home/metap2/exec/process_metaP_data.R
Use of uninitialized value $out0 in substitution (s///) at /home/metap2/exec/readAux.pl line 66.
Use of uninitialized value $out0 in substitution (s///) at /home/metap2/exec/readAux.pl line 67.
Use of uninitialized value in transliteration (tr///) at /home/metap2/exec/readAux.pl line 68.
Use of uninitialized value $out0 in concatenation (.) or string at /home/metap2/exec/readAux.pl line...
Use of uninitialized value $max_length in numeric lt (<) at /home/metap2/exec/readAux.pl line 71.
-rw-rw-r-- 1 metap2 metap2 45601 Aug  8 15:45 .R.Rout
  adding: PCA_PC1_PC3.map (deflated 79%)
  adding: PCAcell.line_PC2_PC3.png (deflated 15%)
  adding: summary.csv (deflated 52%)
  adding: colsToMark.x.csv (deflated 40%)
  adding: phenotypes.csv (deflated 74%)
  adding: data_all.csv (deflated 59%)
  adding: PCA_PC1_PC2.png (deflated 18%)
  adding: PCAtreatment_PC1_PC2.png (deflated 18%)
  adding: PCAtreatment_propOfVar.png (deflated 15%)
  adding: processing_log.txt (deflated 54%)
  adding: options (deflated 39%)
  adding: PCAtreatment_PC1_PC2.map (deflated 80%)
  adding: colsToMark.csv (deflated 8%)
  adding: PCAtreatment_PC1_PC3.png (deflated 15%)
  adding: PCAcell.line.pdf (deflated 81%)
  adding: hypothesisTests_separated_for_treatment.pdf (deflated 86%)
  adding: PCA_PC1_PC2.map (deflated 80%)
  adding: PCA_PC2_PC3.map (deflated 80%)
  adding: PCAtreatment_PC2_PC3.png (deflated 14%)
  adding: hypothesisTests_complete_data.pdf (deflated 86%)
  adding: pValuesForAllMetabolites__treatment.csv (deflated 45%)
  adding: pValuesForAllMetabolites_cell.line_treatment.csv (deflated 74%)
  adding: PCAcell.line_PC1_PC3.map (deflated 79%)
  adding: PCAtreatment.pdf (deflated 82%)
  adding: bonferroni.csv (deflated 32%)
  adding: rowsToMark.csv (deflated 77%)
  adding: metabNamesMapping.csv (deflated 49%)
  adding: PCA.pdf (deflated 81%)
  adding: out_params.txt (stored 0%)
  adding: input (deflated 59%)
  adding: data.csv (deflated 59%)
  adding: phenotypes.txt (deflated 70%)
  adding: phenotypes_for_QC.csv (deflated 71%)
  adding: histograms.pdf (deflated 89%)
  adding: PCAcell.line_PC2_PC3.map (deflated 80%)
  adding: pValuesForAllMetabolites__cell.line.csv (deflated 44%)
  adding: barplots/1022149992_sbarplot.map (deflated 74%)
  adding: barplots/1022150590_sbarplot.map (deflated 74%)
  adding: barplots/Thr_barplot_cell.line.png (deflated 17%)
  adding: barplots/Cit_barplot_treatment.png (deflated 16%)
  adding: barplots/1022150687_sbarplot.map (deflated 74%)
  adding: barplots/1022150464_sbarplot.map (deflated 74%)
  adding: barplots/Pro_barplot_cell.line.png (deflated 15%)
  adding: barplots/Ala_barplot.map (deflated 81%)
  adding: barplots/Val_barplot_cell.line.png (deflated 16%)
  adding: barplots/Trp_barplot.map (deflated 80%)
  adding: barplots/1022150551_sbarplot.png (deflated 50%)
  adding: barplots/1022150668_sbarplot.map (deflated 74%)
  adding: barplots/1022149988_sbarplot.png (deflated 52%)
  adding: barplots/Val_barplot.map (deflated 80%)
  adding: barplots/Pro_barplot_treatment.png (deflated 17%)
  adding: barplots/Ile_barplot_treatment.png (deflated 17%)
  adding: barplots/Lys_barplot.map (deflated 80%)
  adding: barplots/Asn_barplot.map (deflated 80%)
  adding: barplots/1022150547_sbarplot.png (deflated 51%)
  adding: barplots/Gln_barplot.png (deflated 30%)
  adding: barplots/1022150620_sbarplot.png (deflated 50%)
  adding: barplots/1022150736_sbarplot.png (deflated 51%)
  adding: barplots/1022150071_sbarplot.png (deflated 51%)
  adding: barplots/1022150649_sbarplot.map (deflated 74%)
  adding: barplots/Ala_barplot.png (deflated 22%)
  adding: barplots/Ala_barplot_treatment.png (deflated 15%)
  adding: barplots/Trp_barplot_cell.line.png (deflated 16%)
  adding: barplots/Arg_barplot_cell.line.png (deflated 16%)
  adding: barplots/Phe_barplot_treatment.png (deflated 16%)
  adding: barplots/Ser_barplot_cell.line.png (deflated 16%)
  adding: barplots/Gly_barplot_cell.line.png (deflated 17%)
  adding: barplots/Tyr_barplot_treatment.png (deflated 19%)
  adding: barplots/1022150634_sbarplot.png (deflated 50%)
  adding: barplots/Asp_barplot_treatment.png (deflated 16%)
  adding: barplots/Gly_barplot.map (deflated 80%)
  adding: barplots/1022150000_sbarplot.png (deflated 49%)
  adding: barplots/1022150717_sbarplot.png (deflated 50%)
  adding: barplots/1022149992_sbarplot.png (deflated 47%)
  adding: barplots/Met_barplot.png (deflated 20%)
  adding: barplots/Thr_barplot.map (deflated 80%)
  adding: barplots/1022150532_sbarplot.png (deflated 49%)
  adding: barplots/Val_barplot_treatment.png (deflated 17%)
  adding: barplots/Thr_barplot_treatment.png (deflated 18%)
  adding: barplots/1022150498_sbarplot.png (deflated 49%)
  adding: barplots/Met_barplot_cell.line.png (deflated 13%)
  adding: barplots/1022150048_sbarplot.map (deflated 74%)
  adding: barplots/Gln_barplot_cell.line.png (deflated 20%)
  adding: barplots/1022150566_sbarplot.map (deflated 74%)
  adding: barplots/1022150483_sbarplot.map (deflated 74%)
  adding: barplots/1022150620_sbarplot.map (deflated 74%)
  adding: barplots/Asn_barplot_treatment.png (deflated 17%)
  adding: barplots/Asn_barplot.png (deflated 21%)
  adding: barplots/1022150479_sbarplot.map (deflated 74%)
  adding: barplots/Ile_barplot.png (deflated 23%)
  adding: barplots/1022150634_sbarplot.map (deflated 74%)
  adding: barplots/1022150615_sbarplot.png (deflated 50%)
  adding: barplots/Asn_barplot_cell.line.png (deflated 16%)
  adding: barplots/1022150551_sbarplot.map (deflated 74%)
  adding: barplots/1022150691_sbarplot.map (deflated 74%)
  adding: barplots/Lys_barplot_cell.line.png (deflated 14%)
  adding: barplots/His_barplot.map (deflated 80%)
  adding: barplots/1022150450_sbarplot.png (deflated 52%)
  adding: barplots/Cit_barplot_cell.line.png (deflated 16%)
  adding: barplots/1022150067_sbarplot.map (deflated 74%)
  adding: barplots/1022150532_sbarplot.map (deflated 74%)
  adding: barplots/Lys_barplot.png (deflated 24%)
  adding: barplots/Orn_barplot.png (deflated 27%)
  adding: barplots/1022150445_sbarplot.png (deflated 51%)
  adding: barplots/Tyr_barplot.map (deflated 80%)
  adding: barplots/Orn_barplot.map (deflated 80%)
  adding: barplots/Glu_barplot.png (deflated 23%)
  adding: barplots/1022150721_sbarplot.map (deflated 74%)
  adding: barplots/1022150509_sbarplot.map (deflated 73%)
  adding: barplots/Glu_barplot.map (deflated 80%)
  adding: barplots/1022150498_sbarplot.map (deflated 73%)
  adding: barplots/1022149973_sbarplot.map (deflated 74%)
  adding: barplots/1022150571_sbarplot.png (deflated 53%)
  adding: barplots/Tyr_barplot.png (deflated 27%)
  adding: barplots/His_barplot_cell.line.png (deflated 16%)
  adding: barplots/Ala_barplot_cell.line.png (deflated 13%)
  adding: barplots/1022150033_sbarplot.png (deflated 53%)
  adding: barplots/Trp_barplot_treatment.png (deflated 18%)
  adding: barplots/Pro_barplot.png (deflated 23%)
  adding: barplots/1022150513_sbarplot.map (deflated 74%)
  adding: barplots/Leu_barplot.map (deflated 81%)
  adding: barplots/1022150702_sbarplot.png (deflated 51%)
  adding: barplots/Trp_barplot.png (deflated 24%)
  adding: barplots/Orn_barplot_cell.line.png (deflated 15%)
  adding: barplots/1022150479_sbarplot.png (deflated 50%)
  adding: barplots/1022150445_sbarplot.map (deflated 74%)
  adding: barplots/1022150736_sbarplot.map (deflated 74%)
  adding: barplots/1022150668_sbarplot.png (deflated 51%)
  adding: barplots/1022149973_sbarplot.png (deflated 53%)
  adding: barplots/1022150672_sbarplot.map (deflated 74%)
  adding: barplots/Lys_barplot_treatment.png (deflated 16%)
  adding: barplots/Orn_barplot_treatment.png (deflated 19%)
  adding: barplots/Gln_barplot.map (deflated 81%)
  adding: barplots/Leu_barplot_treatment.png (deflated 17%)
  adding: barplots/Arg_barplot_treatment.png (deflated 18%)
  adding: barplots/1022150431_sbarplot.png (deflated 49%)
  adding: barplots/Gly_barplot.png (deflated 34%)
  adding: barplots/1022150052_sbarplot.png (deflated 51%)
  adding: barplots/Phe_barplot_cell.line.png (deflated 15%)
  adding: barplots/1022150717_sbarplot.map (deflated 74%)
  adding: barplots/Cit_barplot.png (deflated 21%)
  adding: barplots/1022150585_sbarplot.png (deflated 51%)
  adding: barplots/1022150585_sbarplot.map (deflated 74%)
  adding: barplots/1022150071_sbarplot.map (deflated 74%)
  adding: barplots/1022150431_sbarplot.map (deflated 74%)
  adding: barplots/Phe_barplot.map (deflated 80%)
  adding: barplots/1022150687_sbarplot.png (deflated 54%)
  adding: barplots/Leu_barplot.png (deflated 23%)
  adding: barplots/1022150086_sbarplot.map (deflated 74%)
  adding: barplots/Val_barplot.png (deflated 24%)
  adding: barplots/1022150014_sbarplot.map (deflated 74%)
  adding: barplots/Asp_barplot_cell.line.png (deflated 15%)
  adding: barplots/1022150483_sbarplot.png (deflated 51%)
  adding: barplots/1022150590_sbarplot.png (deflated 52%)
  adding: barplots/Met_barplot_treatment.png (deflated 13%)
  adding: barplots/1022150649_sbarplot.png (deflated 51%)
  adding: barplots/1022150067_sbarplot.png (deflated 49%)
  adding: barplots/Gln_barplot_treatment.png (deflated 20%)
  adding: barplots/1022150528_sbarplot.png (deflated 50%)
  adding: barplots/Leu_barplot_cell.line.png (deflated 15%)
  adding: barplots/1022150653_sbarplot.map (deflated 74%)
  adding: barplots/1022150653_sbarplot.png (deflated 52%)
  adding: barplots/Ile_barplot_cell.line.png (deflated 15%)
  adding: barplots/Cit_barplot.map (deflated 80%)
  adding: barplots/Arg_barplot.map (deflated 80%)
  adding: barplots/Tyr_barplot_cell.line.png (deflated 18%)
  adding: barplots/1022150464_sbarplot.png (deflated 53%)
  adding: barplots/1022150000_sbarplot.map (deflated 74%)
  adding: barplots/1022150426_sbarplot.png (deflated 52%)
  adding: barplots/1022150426_sbarplot.map (deflated 74%)
  adding: barplots/Arg_barplot.png (deflated 29%)
  adding: barplots/1022150513_sbarplot.png (deflated 49%)
  adding: barplots/1022150528_sbarplot.map (deflated 74%)
  adding: barplots/Glu_barplot_treatment.png (deflated 19%)
  adding: barplots/1022150691_sbarplot.png (deflated 53%)
  adding: barplots/1022150086_sbarplot.png (deflated 49%)
  adding: barplots/1022150566_sbarplot.png (deflated 49%)
  adding: barplots/1022150014_sbarplot.png (deflated 48%)
  adding: barplots/1022150615_sbarplot.map (deflated 74%)
  adding: barplots/Ile_barplot.map (deflated 80%)
  adding: barplots/Phe_barplot.png (deflated 24%)
  adding: barplots/His_barplot.png (deflated 20%)
  adding: barplots/Gly_barplot_treatment.png (deflated 20%)
  adding: barplots/1022150052_sbarplot.map (deflated 74%)
  adding: barplots/1022149988_sbarplot.map (deflated 74%)
  adding: barplots/1022150702_sbarplot.map (deflated 74%)
  adding: barplots/Pro_barplot.map (deflated 80%)
  adding: barplots/1022150721_sbarplot.png (deflated 51%)
  adding: barplots/1022150033_sbarplot.map (deflated 74%)
  adding: barplots/1022150509_sbarplot.png (deflated 49%)
  adding: barplots/Ser_barplot_treatment.png (deflated 18%)
  adding: barplots/Ser_barplot.png (deflated 24%)
  adding: barplots/1022150048_sbarplot.png (deflated 50%)
  adding: barplots/Met_barplot.map (deflated 80%)
  adding: barplots/His_barplot_treatment.png (deflated 16%)
  adding: barplots/Asp_barplot.map (deflated 80%)
  adding: barplots/Thr_barplot.png (deflated 24%)
  adding: barplots/1022150571_sbarplot.map (deflated 74%)
  adding: barplots/1022150547_sbarplot.map (deflated 74%)
  adding: barplots/Glu_barplot_cell.line.png (deflated 17%)
  adding: barplots/1022150672_sbarplot.png (deflated 51%)
  adding: barplots/1022150450_sbarplot.map (deflated 74%)
  adding: barplots/Ser_barplot.map (deflated 81%)
  adding: barplots/Asp_barplot.png (deflated 20%)
  adding: data_all_beforeCheck.csv (deflated 59%)
  adding: data_beforeCheck.csv (deflated 59%)
  adding: PCA_PC1_PC3.png (deflated 15%)
  adding: phenotypes_nominal.csv (deflated 74%)
  adding: pca.rotations.csv (deflated 51%)
  adding: hypothesisTests_separated_for_cell.line.pdf (deflated 89%)
  adding: PCA_propOfVar.png (deflated 23%)
  adding: PCAtreatment_PC2_PC3.map (deflated 80%)
  adding: PCAcell.line_PC1_PC2.map (deflated 80%)
  adding: aux.txt (stored 0%)
  adding: PCAtreatment_PC1_PC3.map (deflated 79%)
  adding: server_log.txt (deflated 84%)
  adding: PCAcell.line_PC1_PC2.png (deflated 18%)
  adding: pValuesForAllMetabolites_treatment_cell.line.csv (deflated 55%)
  adding: PCAcell.line_PC1_PC3.png (deflated 15%)
  adding: PCA_PC2_PC3.png (deflated 14%)
  adding: PCAcell.line_propOfVar.png (deflated 13%)
  adding: phenotypes_beforeCheck.csv (deflated 74%)
FINISHED with /home/metap2/exec/process_metaP_data.R
+ echo 'these are the files that are now here:'
these are the files that are now here:
+ ls -ltra
total 2148
-rw-r--r--    1 www-data www-data  11046 Aug  8 15:44 input.tmp
-rw-r--r--    1 www-data www-data    973 Aug  8 15:44 phenotypes.txt.tmp
-rw-r--r--    1 www-data www-data  11046 Aug  8 15:44 input
-rw-r--r--    1 www-data www-data    973 Aug  8 15:44 phenotypes.txt
-rw-r--r--    1 www-data www-data      0 Aug  8 15:44 aux.txt
-rw-r--r--    1 www-data www-data    244 Aug  8 15:44 options
-rwxr-xr-x    1 www-data www-data    609 Aug  8 15:44 metaPjob.cmd
drwxrwxrwx 2086 metap2   metap2   258048 Aug  8 15:45 ..
-rw-rw-r--    1 metap2   metap2        1 Aug  8 15:45 out_params.txt
-rw-rw-r--    1 metap2   metap2    11045 Aug  8 15:45 input_4R
-rw-rw-r--    1 metap2   metap2      200 Aug  8 15:45 metabNamesMapping.csv
-rw-rw-r--    1 metap2   metap2    11091 Aug  8 15:45 data_beforeCheck.csv
-rw-rw-r--    1 metap2   metap2      967 Aug  8 15:45 phenotypes_beforeCheck.csv
-rw-rw-r--    1 metap2   metap2    11536 Aug  8 15:45 data_all_beforeCheck.csv
-rw-rw-r--    1 metap2   metap2        2 Aug  8 15:45 cv.ok
-rw-rw-r--    1 metap2   metap2      588 Aug  8 15:45 rowsToMark.csv
-rw-rw-r--    1 metap2   metap2      166 Aug  8 15:45 colsToMark.x.csv
-rw-rw-r--    1 metap2   metap2       40 Aug  8 15:45 colsToMark.csv
-rw-rw-r--    1 metap2   metap2      967 Aug  8 15:45 phenotypes.csv
-rw-rw-r--    1 metap2   metap2    11047 Aug  8 15:45 data.csv
-rw-rw-r--    1 metap2   metap2      473 Aug  8 15:45 phenotypes_for_QC.csv
-rw-rw-r--    1 metap2   metap2    11541 Aug  8 15:45 data_all.csv
-rw-rw-r--    1 metap2   metap2      967 Aug  8 15:45 phenotypes_nominal.csv
-rw-rw-r--    1 metap2   metap2     2612 Aug  8 15:45 summary.csv
-rw-rw-r--    1 metap2   metap2   192290 Aug  8 15:45 histograms.pdf
drwxrwxrwx    2 www-data www-data  12288 Aug  8 15:45 barplots
-rw-rw-r--    1 metap2   metap2      634 Aug  8 15:45 pValuesForAllMetabolites__cell.line.csv
-rw-rw-r--    1 metap2   metap2      610 Aug  8 15:45 pValuesForAllMetabolites__treatment.csv
-rw-rw-r--    1 metap2   metap2   180385 Aug  8 15:45 hypothesisTests_complete_data.pdf
-rw-rw-r--    1 metap2   metap2     1039 Aug  8 15:45 pValuesForAllMetabolites_cell.line_treatment.c...
-rw-rw-r--    1 metap2   metap2   357085 Aug  8 15:45 hypothesisTests_separated_for_cell.line.pdf
-rw-rw-r--    1 metap2   metap2     1180 Aug  8 15:45 pValuesForAllMetabolites_treatment_cell.line.c...
-rw-rw-r--    1 metap2   metap2   240163 Aug  8 15:45 hypothesisTests_separated_for_treatment.pdf
-rw-rw-r--    1 metap2   metap2      114 Aug  8 15:45 bonferroni.csv
-rw-rw-r--    1 metap2   metap2     4583 Aug  8 15:45 PCA_PC1_PC2.map
-rw-rw-r--    1 metap2   metap2     2273 Aug  8 15:45 PCA_PC1_PC2.png
-rw-rw-r--    1 metap2   metap2     4583 Aug  8 15:45 PCA_PC1_PC3.map
-rw-rw-r--    1 metap2   metap2     2373 Aug  8 15:45 PCA_PC1_PC3.png
-rw-rw-r--    1 metap2   metap2     4583 Aug  8 15:45 PCA_PC2_PC3.map
-rw-rw-r--    1 metap2   metap2     2409 Aug  8 15:45 PCA_PC2_PC3.png
-rw-rw-r--    1 metap2   metap2     7753 Aug  8 15:45 pca.rotations.csv
-rw-rw-r--    1 metap2   metap2    15681 Aug  8 15:45 PCA.pdf
-rw-rw-r--    1 metap2   metap2     4610 Aug  8 15:45 PCAcell.line_PC1_PC2.map
-rw-rw-r--    1 metap2   metap2     2265 Aug  8 15:45 PCAcell.line_PC1_PC2.png
-rw-rw-r--    1 metap2   metap2     4610 Aug  8 15:45 PCAcell.line_PC1_PC3.map
-rw-rw-r--    1 metap2   metap2     2394 Aug  8 15:45 PCAcell.line_PC1_PC3.png
-rw-rw-r--    1 metap2   metap2     4610 Aug  8 15:45 PCAcell.line_PC2_PC3.map
-rw-rw-r--    1 metap2   metap2     2372 Aug  8 15:45 PCAcell.line_PC2_PC3.png
-rw-rw-r--    1 metap2   metap2    17849 Aug  8 15:45 PCAcell.line.pdf
-rw-rw-r--    1 metap2   metap2     4610 Aug  8 15:45 PCAtreatment_PC1_PC2.map
-rw-rw-r--    1 metap2   metap2     2276 Aug  8 15:45 PCAtreatment_PC1_PC2.png
-rw-rw-r--    1 metap2   metap2     4610 Aug  8 15:45 PCAtreatment_PC1_PC3.map
-rw-rw-r--    1 metap2   metap2     2376 Aug  8 15:45 PCAtreatment_PC1_PC3.png
-rw-rw-r--    1 metap2   metap2     4610 Aug  8 15:45 PCAtreatment_PC2_PC3.map
-rw-rw-r--    1 metap2   metap2     2367 Aug  8 15:45 PCAtreatment_PC2_PC3.png
-rw-rw-r--    1 metap2   metap2    18225 Aug  8 15:45 PCAtreatment.pdf
-rw-rw-r--    1 metap2   metap2    45601 Aug  8 15:45 .R.Rout
-rw-rw-r--    1 metap2   metap2     2625 Aug  8 15:45 PCAtreatment_propOfVar.png
-rw-rw-r--    1 metap2   metap2     3045 Aug  8 15:45 PCAcell.line_propOfVar.png
-rw-rw-r--    1 metap2   metap2     2078 Aug  8 15:45 PCA_propOfVar.png
-rw-rw-r--    1 metap2   metap2     1278 Aug  8 15:45 processing_log.txt
-rw-rw-r--    1 metap2   metap2    13851 Aug  8 15:45 server_log.txt
-rw-rw-r--    1 metap2   metap2   512628 Aug  8 15:45 download.zip
drwxrwxrwx    3 www-data www-data   4096 Aug  8 15:45 .
+ set -
Finishing METAP SERVER


-----

OPTION:FORMAT:data format: ' csv ' OPTION:MISSING:treat LOD/out of quant. data as missing: ' n ' OPTION:OUTLIER:drop outliers : ' n ' OPTION:REFERENCE:drop reference samples : ' n ' OPTION:DEL_METABS:drop metabolites with cv > 0.25 : ' n ' OPTION:RATIOS:calculate metabolite ratios : ' n ' AUX:Barplots of each metabolite class have equal y axis: TRUE Fileformat CSV - deleted lines - win-lin Read CSV dataset with 22 columns and 42 rows Data format: csv EXTRACT: 42 samples and 21 metabolites extracted PHENOTYPES_UPLOAD:Found 42 matched lines with 2 phenotypes specified
PHENOTYPES_UPLOAD:Found cell.line treatment as non-data quality phenotypes
REPLICATES:No replicates BATCHES:No batches Wrote machted dataset to data_all_beforeCheck.csv No replicates in data No extreme outliers identified No extreme outliers identified 42 samples and 21 metabolites in checked data set Wrote machted dataset to data_all.csv Phenotype cell.line is nominal Phenotype treatment is nominal Wrote summary.csv file 21 Distribution plots generated Boxplots generated Boxplots generated Boxplots and hypothesis tests depending on cell.line Boxplots generated Boxplots and hypothesis tests depending on treatment Boxplots generated 1 phenotypes processed for PCA






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Last modification: 28 December 2009

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