OPTION:FORMAT:data format: ' csv ' OPTION:MISSING:treat LOD/out of quant. data as missing: ' n ' OPTION:OUTLIER:drop outliers : ' n ' OPTION:REFERENCE:drop reference samples : ' n ' OPTION:DEL_METABS:drop metabolites with cv > 0.25 : ' n ' OPTION:RATIOS:calculate metabolite ratios : ' n ' AUX:Barplots of each metabolite class have equal y axis: TRUE Fileformat CSV - deleted lines - win-lin Read CSV dataset with 44 columns and 18 rows Data format: csv EXTRACT: 18 samples and 43 metabolites extracted PHENOTYPES_UPLOAD:Found 18 matched lines with 2 phenotypes specified
PHENOTYPES_UPLOAD:Found ID Phase as non-data quality phenotypes
REPLICATES:No replicates BATCHES:No batches Wrote machted dataset to data_all_beforeCheck.csv No replicates in data No extreme outliers identified No extreme outliers identified 18 samples and 43 metabolites in checked data set Wrote machted dataset to data_all.csv Phenotype ID is nominal Phenotype Phase is nominal Wrote summary.csv file 42 Distribution plots generated Boxplots generated Boxplots generated Boxplots and hypothesis tests depending on ID Boxplots generated Boxplots and hypothesis tests depending on Phase Boxplots generated 1 phenotypes processed for PCA