OPTION:FORMAT:data format: ' csv_kegg '
OPTION:MISSING:treat LOD/out of quant. data as missing: ' n '
OPTION:OUTLIER:drop outliers : ' n '
OPTION:REFERENCE:drop reference samples : ' n '
OPTION:DEL_METABS:drop metabolites with cv > 0.25 : ' n '
OPTION:RATIOS:calculate metabolite ratios : ' n '
AUX:Barplots of each metabolite class have equal y axis: TRUE
Read CSV dataset with 190 columns and 48 rows
Data format: csv_kegg
EXTRACT: 48 samples and 189 metabolites extracted
PHENOTYPES_UPLOAD:Found 48 matched lines with 4 phenotypes specified
PHENOTYPES_UPLOAD:Ignored CLIENT_ID column as each sample has its own phenotype specification while being non-numeric
PHENOTYPES_UPLOAD:Found DAY DOSE_MG_KG WEIGHT_MG as non-data quality phenotypes
REPLICATES:No replicates
BATCHES:No batches
Wrote machted dataset to data_all_beforeCheck.csv
No replicates in data
No extreme outliers identified
No extreme outliers identified
48 samples and 189 metabolites in checked data set
Wrote machted dataset to data_all.csv
Phenotype DAY is nominal
Phenotype DOSE_MG_KG is numeric
Phenotype DOSE_MG_KG added to nominal phenotypes also
Phenotype WEIGHT_MG is numeric
Wrote summary.csv file
189 Distribution plots generated