OPTION:FORMAT:data format: ' absoluteIDQ '
OPTION:MISSING:treat LOD/out of quant. data as missing: ' n '
OPTION:OUTLIER:drop outliers : ' n '
OPTION:REFERENCE:drop reference samples : ' n '
OPTION:DEL_METABS:drop metabolites with cv > 0.25 : ' n '
OPTION:RATIOS:calculate metabolite ratios : ' n '
AUX:Barplots of each metabolite class have equal y axis: TRUE 
Fileformat MetIQ - original - win-lin
Read MetIQ dataset with 449 columns and 88 rows
AbsoluteIDQ data format
EXTRACT:No validity information available
Keeping data annotated as non-valid
EXTRACT: 88  samples and  430  metabolites extracted
AbsoluteIDQ data format
EXTRACT:No validity information available
Keeping data annotated as non-valid
PHENOTYPES_UPLOAD:Found  79  matched lines with  3  phenotypes specified<br>
PHENOTYPES_UPLOAD:Found  AGE Radiation Genotype as non-data quality phenotypes<br>
REPLICATES:Added sample description for info on replicates for data quality checks
BATCHES:Added Plate.bar.code as a phenotypes for data quality checks
Wrote machted dataset to data_all_beforeCheck.csv
NA_COLS:For following metabolites all values are missing: C0.Status C10.Status C10.1.Status C10.2.Status C12.Status C12.DC.Status C12.1.Status C14.Status C14.1.Status C14.1.OH.Status C14.2.Status C14.2.OH.Status C16.Status C16.OH.Status C16.1.Status C16.1.OH.Status C16.2.Status C16.2.OH.Status C18.Status C18.1.Status C18.1.OH.Status C18.2.Status C2.Status C3.Status C5.OH..C3.DC.M..Status C3.OH.Status C3.1.Status C4.Status C3.DC..C4.OH..Status C4.1.Status C5.Status C5.DC..C6.OH..Status C5.M.DC.Status C5.1.Status C5.1.DC.Status C6..C4.1.DC..Status C6.1.Status C7.DC.Status C8.Status C9.Status Ala.Status Arg.Status Asn.Status Asp.Status Cit.Status Gln.Status Glu.Status Gly.Status His.Status Ile.Status Leu.Status Lys.Status Met.Status Orn.Status Phe.Status Pro.Status Ser.Status Thr.Status Trp.Status Tyr.Status Val.Status Ac.Orn.Status ADMA.Status alpha.AAA.Status c4.OH.Pro.Status Carnosine.Status Creatinine.Status DOPA.Status Dopamine.Status Histamine.Status Kynurenine.Status Met.SO.Status Nitro.Tyr.Status PEA.Status Putrescine.Status SDMA.Status Serotonin.Status Spermidine.Status Spermine.Status t4.OH.Pro.Status Taurine.Status total.DMA.Status lysoPC.a.C14.0.Status lysoPC.a.C16.0.Status lysoPC.a.C16.1.Status lysoPC.a.C17.0.Status lysoPC.a.C18.0.Status lysoPC.a.C18.1.Status lysoPC.a.C18.2.Status lysoPC.a.C20.3.Status lysoPC.a.C20.4.Status lysoPC.a.C24.0.Status lysoPC.a.C26.0.Status lysoPC.a.C26.1.Status lysoPC.a.C28.0.Status lysoPC.a.C28.1.Status PC.aa.C24.0.Status PC.aa.C26.0.Status PC.aa.C28.1.Status PC.aa.C30.0.Status PC.aa.C30.2.Status PC.aa.C32.0.Status PC.aa.C32.1.Status PC.aa.C32.2.Status PC.aa.C32.3.Status PC.aa.C34.1.Status PC.aa.C34.2.Status PC.aa.C34.3.Status PC.aa.C34.4.Status PC.aa.C36.0.Status PC.aa.C36.1.Status PC.aa.C36.2.Status PC.aa.C36.3.Status PC.aa.C36.4.Status PC.aa.C36.5.Status PC.aa.C36.6.Status PC.aa.C38.0.Status PC.aa.C38.1.Status PC.aa.C38.3.Status PC.aa.C38.4.Status PC.aa.C38.5.Status PC.aa.C38.6.Status PC.aa.C40.1.Status PC.aa.C40.2.Status PC.aa.C40.3.Status PC.aa.C40.4.Status PC.aa.C40.5.Status PC.aa.C40.6.Status PC.aa.C42.0.Status PC.aa.C42.1.Status PC.aa.C42.2.Status PC.aa.C42.4.Status PC.aa.C42.5.Status PC.aa.C42.6.Status PC.ae.C30.0.Status PC.ae.C30.1.Status PC.ae.C30.2.Status PC.ae.C32.1.Status PC.ae.C32.2.Status PC.ae.C34.0.Status PC.ae.C34.1.Status PC.ae.C34.2.Status PC.ae.C34.3.Status PC.ae.C36.0.Status PC.ae.C36.1.Status PC.ae.C36.2.Status PC.ae.C36.3.Status PC.ae.C36.4.Status PC.ae.C36.5.Status PC.ae.C38.0.Status PC.ae.C38.1.Status PC.ae.C38.2.Status PC.ae.C38.3.Status PC.ae.C38.4.Status PC.ae.C38.5.Status PC.ae.C38.6.Status PC.ae.C40.1.Status PC.ae.C40.2.Status PC.ae.C40.3.Status PC.ae.C40.4.Status PC.ae.C40.5.Status PC.ae.C40.6.Status PC.ae.C42.0.Status PC.ae.C42.1.Status PC.ae.C42.2.Status PC.ae.C42.3.Status PC.ae.C42.4.Status PC.ae.C42.5.Status PC.ae.C44.3.Status PC.ae.C44.4.Status PC.ae.C44.5.Status PC.ae.C44.6.Status SM..OH..C14.1.Status SM..OH..C16.1.Status SM..OH..C22.1.Status SM..OH..C22.2.Status SM..OH..C24.1.Status SM.C16.0.Status SM.C16.1.Status SM.C18.0.Status SM.C18.1.Status SM.C20.2.Status SM.C22.3.Status SM.C24.0.Status SM.C24.1.Status SM.C26.0.Status SM.C26.1.Status H1.Status X.C2.C3....C0.Status AAA.Status C2...C0.Status CPT.I.ratio.Status MUFA..PC..Status MUFA..PC....SFA..PC..Status Orn...Arg.Status PUFA..PC..Status PUFA..PC....MUFA..PC..Status PUFA..PC....SFA..PC..Status SFA..PC..Status Total..PC.SM..Status Total.AC...C0.Status Total.AC.DC...Total.AC.Status Total.AC.OH...Total.AC.Status Total.lysoPC.Status Total.lysoPC...Total.PC.Status Total.PC.Status Total.PC.aa.Status Total.PC.ae.Status Total.SM.Status Total.SM...Total..SM.PC..Status Total.SM...Total.PC.Status Total.SM.non.OH.Status Total.SM.OH.Status Total.SM.OH...Total.SM.non.OH.Status Tyr...Phe.Status AAA MUFA..PC. PUFA..PC. PUFA..PC....SFA..PC. Total..PC.SM. Total.lysoPC Total.PC Total.PC.aa . Has been deleted
NA_ROWS:For following samples all values are missing: NA NA NA . Has been deleted 
Boxplots generated
No extreme outliers identified
No extreme outliers identified
 79  samples and  207  metabolites in checked data set
Wrote machted dataset to data_all.csv
Phenotype  AGE  is nominal
Phenotype  Radiation  is numeric
Phenotype  Radiation  added to nominal phenotypes also
Phenotype  Genotype  is nominal
Phenotype  Genotype  added to numeric phenotypes also
 Wrote summary.csv file
 154 Distribution plots generated