OPTION:FORMAT:data format: ' csv '
OPTION:MISSING:treat LOD/out of quant. data as missing: ' n '
OPTION:OUTLIER:drop outliers : ' n '
OPTION:REFERENCE:drop reference samples : ' n '
OPTION:DEL_METABS:drop metabolites with cv > 0.25 : ' n '
OPTION:RATIOS:calculate metabolite ratios : ' n '
AUX:Barplots of each metabolite class have equal y axis: TRUE
Fileformat CSV - deleted lines - win-lin
Read CSV dataset with 22 columns and 42 rows
Data format: csv
EXTRACT: 42 samples and 21 metabolites extracted
PHENOTYPES_UPLOAD:Found 36 matched lines with 2 phenotypes specified
PHENOTYPES_UPLOAD:Found cell.line treatment as non-data quality phenotypes
REPLICATES:No replicates
BATCHES:No batches
Wrote machted dataset to data_all_beforeCheck.csv
No replicates in data
Wrote extreme outliers into lowerOutliers.csv
Wrote extreme outliers into upperOutliers.csv
42 samples and 21 metabolites in checked data set
Wrote machted dataset to data_all.csv
Phenotype cell.line is nominal
Phenotype treatment is nominal
Phenotype treatment added to numeric phenotypes also
Wrote summary.csv file
21 Distribution plots generated
Boxplots generated
Boxplots generated
Boxplots and hypothesis tests depending on cell.line
Boxplots generated
Boxplots and hypothesis tests depending on treatment
Boxplots generated
1 phenotypes processed for PCA
Wrote kendall correlation table with 21 rows and 2 columns in kendall.csv
Correlation plot generated
Wrote kendall correlation table with 21 rows and 2 columns in kendall.csv