Running METAP SERVER Wed Aug 2 22:22:02 CEST 2017 ID=1708022221395341 /home/metap2/exec:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin /home/metap2/data + echo 'we are here' we are here + pwd /home/metap2/public_html/users/1708022221395341 + hostname metap + uname -a Linux metap 4.4.0-65-generic #86-Ubuntu SMP Thu Feb 23 17:49:58 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux + echo 'this is the environment' this is the environment + env RATIOS=n OUTLIER=n MISSING=n DATADIR=/home/metap2/data SHELL=/bin/sh JOBID=MH aa dmso len with replicates 3 REFERENCE=n PATH=/home/metap2/exec:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin PWD=/home/metap2/public_html/users/1708022221395341 PRIVAT=0 LANG=en_US.UTF-8 SHLVL=1 HOME=/home/metap2 ID=1708022221395341 DEL_METABS=n FORMAT=csv LOGNAME=metap2 EMAIL=unknown USERID=unknown DEVELOPT= _=/usr/bin/env + echo 'this is a first R script that works on the input data' this is a first R script that works on the input data + '[' '' = werner ']' + '[' '' = karsten ']' + '[' '' = gabi ']' + '[' '' = elisabeth ']' + process_metaP_data.R RUNNING /home/metap2/exec/process_metaP_data.R Use of uninitialized value $out0 in substitution (s///) at /home/metap2/exec/readAux.pl line 66. Use of uninitialized value $out0 in substitution (s///) at /home/metap2/exec/readAux.pl line 67. Use of uninitialized value in transliteration (tr///) at /home/metap2/exec/readAux.pl line 68. Use of uninitialized value $out0 in concatenation (.) or string at /home/metap2/exec/readAux.pl line 69. Use of uninitialized value $max_length in numeric lt (<) at /home/metap2/exec/readAux.pl line 71. -rw-rw-r-- 1 metap2 metap2 40477 Aug 2 22:22 .R.Rout adding: kendall.csv (deflated 45%) adding: KL_cv.csv (deflated 46%) adding: PCA_PC1_PC3.map (deflated 80%) adding: PCAcell.line_PC2_PC3.png (deflated 21%) adding: summary.csv (deflated 48%) adding: colsToMark.x.csv (deflated 37%) adding: phenotypes.csv (deflated 74%) adding: kendall.pdf (deflated 72%) adding: data_all.csv (deflated 56%) adding: PCA_PC1_PC2.png (deflated 21%) adding: PCAtreatment_PC1_PC2.png (deflated 20%) adding: PCAtreatment_propOfVar.png (deflated 16%) adding: cv_average.csv (deflated 51%) adding: processing_log.txt (deflated 58%) adding: options (deflated 38%) adding: PCAtreatment_PC1_PC2.map (deflated 80%) adding: colsToMark.csv (deflated 18%) adding: PCAtreatment_PC1_PC3.png (deflated 21%) adding: phenotypes_numeric.csv (deflated 75%) adding: PCAcell.line.pdf (deflated 81%) adding: cv.pdf (deflated 92%) adding: MD_cv.csv (deflated 45%) adding: hypothesisTests_separated_for_treatment.pdf (deflated 85%) adding: PCA_PC1_PC2.map (deflated 80%) adding: JL_cv.csv (deflated 45%) adding: PCA:cell.line.pdf (deflated 81%) adding: PCA_PC2_PC3.map (deflated 80%) adding: PCAtreatment_PC2_PC3.png (deflated 20%) adding: hypothesisTests_complete_data.pdf (deflated 86%) adding: pValuesForAllMetabolites__treatment.csv (deflated 43%) adding: pValuesForAllMetabolites_cell.line_treatment.csv (deflated 67%) adding: PCAcell.line_PC1_PC3.map (deflated 80%) adding: PCAtreatment.pdf (deflated 82%) adding: bonferroni.csv (deflated 32%) adding: rowsToMark.csv (deflated 77%) adding: RL_cv.csv (deflated 46%) adding: metabNamesMapping.csv (deflated 49%) adding: PCA.pdf (deflated 81%) adding: out_params.txt (stored 0%) adding: input (deflated 55%) adding: KD_cv.csv (deflated 46%) adding: data.csv (deflated 55%) adding: phenotypes.txt (deflated 69%) adding: DU_cv.csv (deflated 46%) adding: ML_cv.csv (deflated 46%) adding: phenotypes_for_QC.csv (deflated 70%) adding: histograms.pdf (deflated 89%) adding: PCAcell.line_PC2_PC3.map (deflated 80%) adding: AD_cv.csv (deflated 45%) adding: upperOutliers.csv (deflated 43%) adding: pValuesForAllMetabolites__cell.line.csv (deflated 44%) adding: barplots/1022149992_sbarplot.map (deflated 74%) adding: barplots/1022150590_sbarplot.map (deflated 74%) adding: barplots/Thr_barplot_cell.line.png (deflated 17%) adding: barplots/Cit_barplot_treatment.png (deflated 18%) adding: barplots/1022150687_sbarplot.map (deflated 74%) adding: barplots/1022150464_sbarplot.map (deflated 74%) adding: barplots/Pro_barplot_cell.line.png (deflated 16%) adding: barplots/Ala_barplot.map (deflated 80%) adding: barplots/Val_barplot_cell.line.png (deflated 18%) adding: barplots/Trp_barplot.map (deflated 80%) adding: barplots/1022150551_sbarplot.png (deflated 50%) adding: barplots/1022150668_sbarplot.map (deflated 74%) adding: barplots/1022149988_sbarplot.png (deflated 48%) adding: barplots/Val_barplot.map (deflated 80%) adding: barplots/Pro_barplot_treatment.png (deflated 18%) adding: barplots/Ile_barplot_treatment.png (deflated 23%) adding: barplots/Lys_barplot.map (deflated 80%) adding: barplots/Asn_barplot.map (deflated 80%) adding: barplots/1022150547_sbarplot.png (deflated 52%) adding: barplots/Gln_barplot.png (deflated 29%) adding: barplots/1022150620_sbarplot.png (deflated 51%) adding: barplots/1022150736_sbarplot.png (deflated 53%) adding: barplots/1022150071_sbarplot.png (deflated 58%) adding: barplots/1022150649_sbarplot.map (deflated 74%) adding: barplots/Ala_barplot.png (deflated 24%) adding: barplots/Ala_barplot_treatment.png (deflated 19%) adding: barplots/Trp_barplot_cell.line.png (deflated 16%) adding: barplots/Arg_barplot_cell.line.png (deflated 18%) adding: barplots/Phe_barplot_treatment.png (deflated 24%) adding: barplots/Ser_barplot_cell.line.png (deflated 21%) adding: barplots/Gly_barplot_cell.line.png (deflated 19%) adding: barplots/Tyr_barplot_treatment.png (deflated 20%) adding: barplots/1022150634_sbarplot.png (deflated 51%) adding: barplots/Asp_barplot_treatment.png (deflated 21%) adding: barplots/Gly_barplot.map (deflated 80%) adding: barplots/1022150000_sbarplot.png (deflated 49%) adding: barplots/1022150717_sbarplot.png (deflated 50%) adding: barplots/1022149992_sbarplot.png (deflated 49%) adding: barplots/Met_barplot.png (deflated 23%) adding: barplots/Thr_barplot.map (deflated 81%) adding: barplots/1022150532_sbarplot.png (deflated 49%) adding: barplots/Val_barplot_treatment.png (deflated 24%) adding: barplots/Thr_barplot_treatment.png (deflated 22%) adding: barplots/1022150498_sbarplot.png (deflated 50%) adding: barplots/Met_barplot_cell.line.png (deflated 15%) adding: barplots/1022150048_sbarplot.map (deflated 74%) adding: barplots/Gln_barplot_cell.line.png (deflated 17%) adding: barplots/1022150566_sbarplot.map (deflated 74%) adding: barplots/1022150483_sbarplot.map (deflated 74%) adding: barplots/1022150620_sbarplot.map (deflated 74%) adding: barplots/Asn_barplot_treatment.png (deflated 23%) adding: barplots/Asn_barplot.png (deflated 26%) adding: barplots/1022150479_sbarplot.map (deflated 74%) adding: barplots/Ile_barplot.png (deflated 27%) adding: barplots/1022150634_sbarplot.map (deflated 74%) adding: barplots/1022150615_sbarplot.png (deflated 53%) adding: barplots/Asn_barplot_cell.line.png (deflated 17%) adding: barplots/1022150551_sbarplot.map (deflated 74%) adding: barplots/1022150691_sbarplot.map (deflated 74%) adding: barplots/Lys_barplot_cell.line.png (deflated 20%) adding: barplots/His_barplot.map (deflated 80%) adding: barplots/1022150450_sbarplot.png (deflated 52%) adding: barplots/Cit_barplot_cell.line.png (deflated 15%) adding: barplots/1022150067_sbarplot.map (deflated 74%) adding: barplots/1022150532_sbarplot.map (deflated 74%) adding: barplots/Lys_barplot.png (deflated 29%) adding: barplots/Orn_barplot.png (deflated 30%) adding: barplots/1022150445_sbarplot.png (deflated 51%) adding: barplots/Tyr_barplot.map (deflated 80%) adding: barplots/Orn_barplot.map (deflated 80%) adding: barplots/Glu_barplot.png (deflated 24%) adding: barplots/1022150721_sbarplot.map (deflated 74%) adding: barplots/1022150509_sbarplot.map (deflated 74%) adding: barplots/Glu_barplot.map (deflated 80%) adding: barplots/1022150498_sbarplot.map (deflated 74%) adding: barplots/1022149973_sbarplot.map (deflated 74%) adding: barplots/1022150571_sbarplot.png (deflated 52%) adding: barplots/Tyr_barplot.png (deflated 26%) adding: barplots/His_barplot_cell.line.png (deflated 18%) adding: barplots/Ala_barplot_cell.line.png (deflated 16%) adding: barplots/1022150033_sbarplot.png (deflated 58%) adding: barplots/Trp_barplot_treatment.png (deflated 20%) adding: barplots/Pro_barplot.png (deflated 24%) adding: barplots/1022150513_sbarplot.map (deflated 74%) adding: barplots/Leu_barplot.map (deflated 81%) adding: barplots/1022150702_sbarplot.png (deflated 50%) adding: barplots/Trp_barplot.png (deflated 26%) adding: barplots/Orn_barplot_cell.line.png (deflated 18%) adding: barplots/1022150479_sbarplot.png (deflated 50%) adding: barplots/1022150445_sbarplot.map (deflated 74%) adding: barplots/1022150736_sbarplot.map (deflated 74%) adding: barplots/1022150668_sbarplot.png (deflated 52%) adding: barplots/1022149973_sbarplot.png (deflated 51%) adding: barplots/1022150672_sbarplot.map (deflated 74%) adding: barplots/Lys_barplot_treatment.png (deflated 23%) adding: barplots/Orn_barplot_treatment.png (deflated 23%) adding: barplots/Gln_barplot.map (deflated 81%) adding: barplots/Leu_barplot_treatment.png (deflated 22%) adding: barplots/Arg_barplot_treatment.png (deflated 22%) adding: barplots/1022150431_sbarplot.png (deflated 50%) adding: barplots/Gly_barplot.png (deflated 28%) adding: barplots/1022150052_sbarplot.png (deflated 58%) adding: barplots/Phe_barplot_cell.line.png (deflated 18%) adding: barplots/1022150717_sbarplot.map (deflated 74%) adding: barplots/Cit_barplot.png (deflated 22%) adding: barplots/1022150585_sbarplot.png (deflated 50%) adding: barplots/1022150585_sbarplot.map (deflated 74%) adding: barplots/1022150071_sbarplot.map (deflated 75%) adding: barplots/1022150431_sbarplot.map (deflated 74%) adding: barplots/Phe_barplot.map (deflated 81%) adding: barplots/1022150687_sbarplot.png (deflated 50%) adding: barplots/Leu_barplot.png (deflated 28%) adding: barplots/1022150086_sbarplot.map (deflated 75%) adding: barplots/Val_barplot.png (deflated 32%) adding: barplots/1022150014_sbarplot.map (deflated 74%) adding: barplots/Asp_barplot_cell.line.png (deflated 18%) adding: barplots/1022150483_sbarplot.png (deflated 54%) adding: barplots/1022150590_sbarplot.png (deflated 51%) adding: barplots/Met_barplot_treatment.png (deflated 21%) adding: barplots/1022150649_sbarplot.png (deflated 51%) adding: barplots/1022150067_sbarplot.png (deflated 57%) adding: barplots/Gln_barplot_treatment.png (deflated 22%) adding: barplots/1022150528_sbarplot.png (deflated 52%) adding: barplots/Leu_barplot_cell.line.png (deflated 16%) adding: barplots/1022150653_sbarplot.map (deflated 74%) adding: barplots/1022150653_sbarplot.png (deflated 52%) adding: barplots/Ile_barplot_cell.line.png (deflated 18%) adding: barplots/Cit_barplot.map (deflated 80%) adding: barplots/Arg_barplot.map (deflated 80%) adding: barplots/Tyr_barplot_cell.line.png (deflated 16%) adding: barplots/1022150464_sbarplot.png (deflated 50%) adding: barplots/1022150000_sbarplot.map (deflated 74%) adding: barplots/1022150426_sbarplot.png (deflated 51%) adding: barplots/1022150426_sbarplot.map (deflated 74%) adding: barplots/Arg_barplot.png (deflated 27%) adding: barplots/1022150513_sbarplot.png (deflated 49%) adding: barplots/1022150528_sbarplot.map (deflated 74%) adding: barplots/Glu_barplot_treatment.png (deflated 21%) adding: barplots/1022150691_sbarplot.png (deflated 51%) adding: barplots/1022150086_sbarplot.png (deflated 58%) adding: barplots/1022150566_sbarplot.png (deflated 50%) adding: barplots/1022150014_sbarplot.png (deflated 48%) adding: barplots/1022150615_sbarplot.map (deflated 74%) adding: barplots/Ile_barplot.map (deflated 80%) adding: barplots/Phe_barplot.png (deflated 26%) adding: barplots/His_barplot.png (deflated 26%) adding: barplots/Gly_barplot_treatment.png (deflated 23%) adding: barplots/1022150052_sbarplot.map (deflated 75%) adding: barplots/1022149988_sbarplot.map (deflated 74%) adding: barplots/1022150702_sbarplot.map (deflated 74%) adding: barplots/Pro_barplot.map (deflated 81%) adding: barplots/1022150721_sbarplot.png (deflated 53%) adding: barplots/1022150033_sbarplot.map (deflated 74%) adding: barplots/1022150509_sbarplot.png (deflated 51%) adding: barplots/Ser_barplot_treatment.png (deflated 26%) adding: barplots/Ser_barplot.png (deflated 32%) adding: barplots/1022150048_sbarplot.png (deflated 54%) adding: barplots/Met_barplot.map (deflated 81%) adding: barplots/His_barplot_treatment.png (deflated 21%) adding: barplots/Asp_barplot.map (deflated 81%) adding: barplots/Thr_barplot.png (deflated 24%) adding: barplots/1022150571_sbarplot.map (deflated 74%) adding: barplots/1022150547_sbarplot.map (deflated 74%) adding: barplots/Glu_barplot_cell.line.png (deflated 17%) adding: barplots/1022150672_sbarplot.png (deflated 53%) adding: barplots/1022150450_sbarplot.map (deflated 73%) adding: barplots/Ser_barplot.map (deflated 81%) adding: barplots/Asp_barplot.png (deflated 28%) adding: data_all_beforeCheck.csv (deflated 56%) adding: PCA:treatment.pdf (deflated 81%) adding: lowerOutliers.csv (deflated 49%) adding: data_beforeCheck.csv (deflated 55%) adding: JD_cv.csv (deflated 46%) adding: PCA_PC1_PC3.png (deflated 22%) adding: phenotypes_nominal.csv (deflated 74%) adding: pca.rotations.csv (deflated 51%) adding: hypothesisTests_separated_for_cell.line.pdf (deflated 89%) adding: PCA_propOfVar.png (deflated 19%) adding: PCAtreatment_PC2_PC3.map (deflated 80%) adding: PCAcell.line_PC1_PC2.map (deflated 80%) adding: aux.txt (stored 0%) adding: AL_cv.csv (deflated 45%) adding: PCAtreatment_PC1_PC3.map (deflated 80%) adding: kendall.png (deflated 77%) adding: server_log.txt (deflated 84%) adding: metabolitesForDropping.csv (stored 0%) adding: PCAcell.line_PC1_PC2.png (deflated 20%) adding: UL_cv.csv (deflated 46%) adding: pca.rotations_cell.line.csv (deflated 51%) adding: pValuesForAllMetabolites_treatment_cell.line.csv (deflated 51%) adding: PCAcell.line_PC1_PC3.png (deflated 21%) adding: PCA_PC2_PC3.png (deflated 20%) adding: PCAcell.line_propOfVar.png (deflated 13%) adding: pca.rotations_cell.line_treatment.csv (deflated 51%) adding: phenotypes_beforeCheck.csv (deflated 74%) adding: RD_cv.csv (deflated 46%) FINISHED with /home/metap2/exec/process_metaP_data.R + echo 'these are the files that are now here:' these are the files that are now here: + ls -ltra total 2152 -rw-r--r-- 1 www-data www-data 5348 Aug 2 22:21 input.tmp -rw-r--r-- 1 www-data www-data 5348 Aug 2 22:21 input -rw-r--r-- 1 www-data www-data 936 Aug 2 22:21 phenotypes.txt.tmp -rw-r--r-- 1 www-data www-data 936 Aug 2 22:21 phenotypes.txt -rw-r--r-- 1 www-data www-data 0 Aug 2 22:21 aux.txt -rw-r--r-- 1 www-data www-data 257 Aug 2 22:21 options -rwxr-xr-x 1 www-data www-data 603 Aug 2 22:21 metaPjob.cmd drwxrwxrwx 2314 metap2 metap2 258048 Aug 2 22:22 .. -rw-rw-r-- 1 metap2 metap2 1 Aug 2 22:22 out_params.txt -rw-rw-r-- 1 metap2 metap2 5347 Aug 2 22:22 input_4R -rw-rw-r-- 1 metap2 metap2 200 Aug 2 22:22 metabNamesMapping.csv -rw-rw-r-- 1 metap2 metap2 5391 Aug 2 22:22 data_beforeCheck.csv -rw-rw-r-- 1 metap2 metap2 1053 Aug 2 22:22 phenotypes_beforeCheck.csv -rw-rw-r-- 1 metap2 metap2 5922 Aug 2 22:22 data_all_beforeCheck.csv -rw-rw-r-- 1 metap2 metap2 646 Aug 2 22:22 AD_cv.csv -rw-rw-r-- 1 metap2 metap2 638 Aug 2 22:22 AL_cv.csv -rw-rw-r-- 1 metap2 metap2 644 Aug 2 22:22 DU_cv.csv -rw-rw-r-- 1 metap2 metap2 644 Aug 2 22:22 JD_cv.csv -rw-rw-r-- 1 metap2 metap2 644 Aug 2 22:22 JL_cv.csv -rw-rw-r-- 1 metap2 metap2 643 Aug 2 22:22 KD_cv.csv -rw-rw-r-- 1 metap2 metap2 647 Aug 2 22:22 KL_cv.csv -rw-rw-r-- 1 metap2 metap2 637 Aug 2 22:22 MD_cv.csv -rw-rw-r-- 1 metap2 metap2 638 Aug 2 22:22 ML_cv.csv -rw-rw-r-- 1 metap2 metap2 641 Aug 2 22:22 RD_cv.csv -rw-rw-r-- 1 metap2 metap2 640 Aug 2 22:22 RL_cv.csv -rw-rw-r-- 1 metap2 metap2 637 Aug 2 22:22 UL_cv.csv -rw-rw-r-- 1 metap2 metap2 70908 Aug 2 22:22 cv.pdf -rw-rw-r-- 1 metap2 metap2 2 Aug 2 22:22 cv.ok -rw-rw-r-- 1 metap2 metap2 378 Aug 2 22:22 cv_average.csv -rw-rw-r-- 1 metap2 metap2 12 Aug 2 22:22 metabolitesForDropping.csv -rw-rw-r-- 1 metap2 metap2 852 Aug 2 22:22 lowerOutliers.csv -rw-rw-r-- 1 metap2 metap2 673 Aug 2 22:22 upperOutliers.csv -rw-rw-r-- 1 metap2 metap2 588 Aug 2 22:22 rowsToMark.csv -rw-rw-r-- 1 metap2 metap2 187 Aug 2 22:22 colsToMark.x.csv -rw-rw-r-- 1 metap2 metap2 57 Aug 2 22:22 colsToMark.csv -rw-rw-r-- 1 metap2 metap2 613 Aug 2 22:22 phenotypes_for_QC.csv -rw-rw-r-- 1 metap2 metap2 913 Aug 2 22:22 phenotypes.csv -rw-rw-r-- 1 metap2 metap2 5347 Aug 2 22:22 data.csv -rw-rw-r-- 1 metap2 metap2 5787 Aug 2 22:22 data_all.csv -rw-rw-r-- 1 metap2 metap2 663 Aug 2 22:22 phenotypes_numeric.csv -rw-rw-r-- 1 metap2 metap2 913 Aug 2 22:22 phenotypes_nominal.csv -rw-rw-r-- 1 metap2 metap2 1828 Aug 2 22:22 summary.csv -rw-rw-r-- 1 metap2 metap2 192710 Aug 2 22:22 histograms.pdf drwxrwxrwx 2 www-data www-data 12288 Aug 2 22:22 barplots -rw-rw-r-- 1 metap2 metap2 635 Aug 2 22:22 pValuesForAllMetabolites__cell.line.csv -rw-rw-r-- 1 metap2 metap2 579 Aug 2 22:22 pValuesForAllMetabolites__treatment.csv -rw-rw-r-- 1 metap2 metap2 149885 Aug 2 22:22 hypothesisTests_complete_data.pdf -rw-rw-r-- 1 metap2 metap2 971 Aug 2 22:22 pValuesForAllMetabolites_cell.line_treatment.csv -rw-rw-r-- 1 metap2 metap2 299450 Aug 2 22:22 hypothesisTests_separated_for_cell.line.pdf -rw-rw-r-- 1 metap2 metap2 114 Aug 2 22:22 bonferroni.csv -rw-rw-r-- 1 metap2 metap2 1037 Aug 2 22:22 pValuesForAllMetabolites_treatment_cell.line.csv -rw-rw-r-- 1 metap2 metap2 174760 Aug 2 22:22 hypothesisTests_separated_for_treatment.pdf -rw-rw-r-- 1 metap2 metap2 4593 Aug 2 22:22 PCA_PC1_PC2.map -rw-rw-r-- 1 metap2 metap2 2159 Aug 2 22:22 PCA_PC1_PC2.png -rw-rw-r-- 1 metap2 metap2 4583 Aug 2 22:22 PCA_PC1_PC3.map -rw-rw-r-- 1 metap2 metap2 2143 Aug 2 22:22 PCA_PC1_PC3.png -rw-rw-r-- 1 metap2 metap2 4579 Aug 2 22:22 PCA_PC2_PC3.map -rw-rw-r-- 1 metap2 metap2 2125 Aug 2 22:22 PCA_PC2_PC3.png -rw-rw-r-- 1 metap2 metap2 8586 Aug 2 22:22 pca.rotations.csv -rw-rw-r-- 1 metap2 metap2 14831 Aug 2 22:22 PCA.pdf -rw-rw-r-- 1 metap2 metap2 4620 Aug 2 22:22 PCAcell.line_PC1_PC2.map -rw-rw-r-- 1 metap2 metap2 2148 Aug 2 22:22 PCAcell.line_PC1_PC2.png -rw-rw-r-- 1 metap2 metap2 4610 Aug 2 22:22 PCAcell.line_PC1_PC3.map -rw-rw-r-- 1 metap2 metap2 2154 Aug 2 22:22 PCAcell.line_PC1_PC3.png -rw-rw-r-- 1 metap2 metap2 4606 Aug 2 22:22 PCAcell.line_PC2_PC3.map -rw-rw-r-- 1 metap2 metap2 2167 Aug 2 22:22 PCAcell.line_PC2_PC3.png -rw-rw-r-- 1 metap2 metap2 16826 Aug 2 22:22 PCAcell.line.pdf -rw-rw-r-- 1 metap2 metap2 8551 Aug 2 22:22 pca.rotations_cell.line.csv -rw-rw-r-- 1 metap2 metap2 15714 Aug 2 22:22 PCA:cell.line.pdf -rw-rw-r-- 1 metap2 metap2 4620 Aug 2 22:22 PCAtreatment_PC1_PC2.map -rw-rw-r-- 1 metap2 metap2 2147 Aug 2 22:22 PCAtreatment_PC1_PC2.png -rw-rw-r-- 1 metap2 metap2 4610 Aug 2 22:22 PCAtreatment_PC1_PC3.map -rw-rw-r-- 1 metap2 metap2 2124 Aug 2 22:22 PCAtreatment_PC1_PC3.png -rw-rw-r-- 1 metap2 metap2 4606 Aug 2 22:22 PCAtreatment_PC2_PC3.map -rw-rw-r-- 1 metap2 metap2 2127 Aug 2 22:22 PCAtreatment_PC2_PC3.png -rw-rw-r-- 1 metap2 metap2 16894 Aug 2 22:22 PCAtreatment.pdf -rw-rw-r-- 1 metap2 metap2 15782 Aug 2 22:22 PCA:treatment.pdf -rw-rw-r-- 1 metap2 metap2 8551 Aug 2 22:22 pca.rotations_cell.line_treatment.csv -rw-rw-r-- 1 metap2 metap2 5277 Aug 2 22:22 kendall.pdf -rw-rw-r-- 1 metap2 metap2 922 Aug 2 22:22 kendall.csv -rw-rw-r-- 1 metap2 metap2 40477 Aug 2 22:22 .R.Rout -rw-rw-r-- 1 metap2 metap2 3574 Aug 2 22:22 kendall.png -rw-rw-r-- 1 metap2 metap2 2515 Aug 2 22:22 PCAtreatment_propOfVar.png -rw-rw-r-- 1 metap2 metap2 3007 Aug 2 22:22 PCAcell.line_propOfVar.png -rw-rw-r-- 1 metap2 metap2 2172 Aug 2 22:22 PCA_propOfVar.png -rw-rw-r-- 1 metap2 metap2 1620 Aug 2 22:22 processing_log.txt -rw-rw-r-- 1 metap2 metap2 14849 Aug 2 22:22 server_log.txt -rw-rw-r-- 1 metap2 metap2 484468 Aug 2 22:22 download.zip drwxrwxrwx 3 www-data www-data 4096 Aug 2 22:22 . + set - Finishing METAP SERVER