OPTION:FORMAT:data format: ' csv '
OPTION:MISSING:treat LOD/out of quant. data as missing: ' n '
OPTION:OUTLIER:drop outliers : ' n '
OPTION:REFERENCE:drop reference samples : ' n '
OPTION:DEL_METABS:drop metabolites with cv > 0.25 : ' n '
OPTION:RATIOS:calculate metabolite ratios : ' n '
AUX:Barplots of each metabolite class have equal y axis: TRUE
Fileformat CSV - deleted lines - win-lin
Read CSV dataset with 22 columns and 6 rows
Data format: csv
EXTRACT: 6 samples and 21 metabolites extracted
PHENOTYPES_UPLOAD:Found 6 matched lines with 3 phenotypes specified
REPLICATES:Found REPLICATES as a phenotype for data quality checks
PHENOTYPES_UPLOAD:Ignored cell.line column as it contains the same phenotype for all samples
PHENOTYPES_UPLOAD:Found treatment as non-data quality phenotypes
BATCHES:No batches
Wrote machted dataset to data_all_beforeCheck.csv
DEL_METAB:Found 1 metabolites with cv above 0.25
No extreme outliers identified
Wrote extreme outliers into upperOutliers.csv
6 samples and 21 metabolites in checked data set
Wrote machted dataset to data_all.csv
Phenotype treatment is nominal
Phenotype treatment added to numeric phenotypes also
Wrote summary.csv file
21 Distribution plots generated
Boxplots generated
1 phenotypes processed for PCA
Wrote kendall correlation table with 21 rows and 2 columns in kendall.csv
Correlation plot generated
Wrote kendall correlation table with 21 rows and 2 columns in kendall.csv