OPTION:FORMAT:data format: ' csv ' OPTION:MISSING:treat LOD/out of quant. data as missing: ' n ' OPTION:OUTLIER:drop outliers : ' n ' OPTION:REFERENCE:drop reference samples : ' n ' OPTION:DEL_METABS:drop metabolites with cv > 0.25 : ' n ' OPTION:RATIOS:calculate metabolite ratios : ' n ' AUX:Barplots of each metabolite class have equal y axis: TRUE Fileformat CSV - deleted lines - win-lin Read CSV dataset with 22 columns and 6 rows Data format: csv EXTRACT: 6 samples and 21 metabolites extracted PHENOTYPES_UPLOAD:Found 6 matched lines with 3 phenotypes specified
REPLICATES:Found REPLICATES as a phenotype for data quality checks PHENOTYPES_UPLOAD:Ignored cell.line column as it contains the same phenotype for all samples
PHENOTYPES_UPLOAD:Found treatment as non-data quality phenotypes
BATCHES:No batches Wrote machted dataset to data_all_beforeCheck.csv DEL_METAB:Found 2 metabolites with cv above 0.25 No extreme outliers identified No extreme outliers identified 6 samples and 21 metabolites in checked data set Wrote machted dataset to data_all.csv Phenotype treatment is nominal Phenotype treatment added to numeric phenotypes also Wrote summary.csv file 21 Distribution plots generated Boxplots generated 1 phenotypes processed for PCA Wrote kendall correlation table with 21 rows and 2 columns in kendall.csv Correlation plot generated Wrote kendall correlation table with 21 rows and 2 columns in kendall.csv