OPTION:FORMAT:data format: ' csv ' OPTION:MISSING:treat LOD/out of quant. data as missing: ' n ' OPTION:OUTLIER:drop outliers : ' n ' OPTION:REFERENCE:drop reference samples : ' n ' OPTION:DEL_METABS:drop metabolites with cv > 0.25 : ' n ' OPTION:RATIOS:calculate metabolite ratios : ' n ' AUX:Barplots of each metabolite class have equal y axis: TRUE Fileformat CSV - deleted lines - win-lin Read CSV dataset with 22 columns and 18 rows Data format: csv EXTRACT: 18 samples and 21 metabolites extracted PHENOTYPES_UPLOAD:Found 18 matched lines with 3 phenotypes specified
REPLICATES:Found REPLICATES as a phenotype for data quality checks PHENOTYPES_UPLOAD:Found cell.line treatment as non-data quality phenotypes
BATCHES:No batches Wrote machted dataset to data_all_beforeCheck.csv No extreme outliers identified No extreme outliers identified 18 samples and 21 metabolites in checked data set Wrote machted dataset to data_all.csv Phenotype cell.line is nominal Phenotype treatment is nominal Phenotype treatment added to numeric phenotypes also Wrote summary.csv file 21 Distribution plots generated Boxplots generated Boxplots generated Boxplots and hypothesis tests depending on cell.line Boxplots generated Boxplots and hypothesis tests depending on treatment Boxplots generated 1 phenotypes processed for PCA Wrote kendall correlation table with 21 rows and 2 columns in kendall.csv Correlation plot generated Wrote kendall correlation table with 21 rows and 2 columns in kendall.csv