HelmholtzZentrum munich
WCMC

Connecting genetic risk to disease endpoints through the human blood plasma proteome

ONLINE SUPPLEMENTARY INFORMATION

Home
Ideogram
Loci
Network view
Proteome annotation
Help
Locus annotations

Locus 166

Top associations per target

Target cis/​trans Study SNP SNP location Maj/​min allele MAF N βinv seinv Pinv fclog Plog Praw
Semaphorin 3E cis Discovery rs3109167 7:82,977,124 A/T 0.47 988 0.447 0.042 9.1×10-25 1.210 1.4×10-22 7.6×10-5
Semaphorin 3E cis Replication rs2722974 7:83,029,438 G/A 0.37 337 0.179 0.070 0.011 1.090 0.01 0.241

 

Regional association plots

 

Boxplots and histograms for top associations

Semaphorin-3E (Semaphorin 3E)

inverse-normalized probe levels log2 transformed probe levels raw probe levels
Discovery study
Replication study

Semaphorin-3E (Semaphorin 3E)

Target (abbrv.) Semaphorin 3E
Target (full name) Semaphorin-3E
Somalogic ID (Sequence ID) SL010470 (5363-51_3)
Entrez Gene Symbol SEMA3E
UniProt ID O15041
UniProt Comment
  • Plays an important role in signaling via the cell surface receptor PLXND1. Mediates reorganization of the actin cytoskeleton, leading to the retraction of cell projections. Promotes focal adhesion disassembly and inhibits adhesion of endothelial cells to the extracellular matrix. Regulates angiogenesis, both during embryogenesis and after birth. Can down-regulate sprouting angiogenesis. Required for normal vascular patterning during embryogenesis. Plays an important role in ensuring the specificity of synapse formation (By similarity).
Pathway Interaction Database
  • Plexin-D1 Signaling
Reactome
  • Other semaphorin interactions

All locus annotations are based on the sentinel SNP (rs3109167) and 2 proxy variant(s) that is/are in linkage disequilibrium r2 ≥ 0.8. Linkage disequilibrium is based on data from the 1000 Genomes Project, phase 3 version 5, European population and was retrieved using SNiPA's Block Annotation feature.
Download the detailed results of SNiPA's block annotation (PDF)

Linked genes

There are no genes linked to the sentinel variant or to one of its proxies in linkage disequilibrium.

 

Results from other genome-wide association studies


Warning: count(): Parameter must be an array or an object that implements Countable in /var/www/html/pGWAS/locuscard.php on line 365

No associations available.