Target | cis/trans | Study | SNP | SNP location | Maj/min allele | MAF | N | βinv | seinv | Pinv | fclog | Plog | Praw |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Siglec-9 | cis | Discovery | rs3745542 | 19:51,587,643 | T/C | 0.31 | 996 | 0.336 | 0.048 | 3.1×10-12 | 1.910 | 2×10-11 | 3.9×10-12 |
Siglec-9 | cis | Replication | rs2691232 | 19:51,587,288 | C/A | 0.24 | 337 | 0.021 | 0.083 | 0.8 | 1.080 | 0.669 | 0.563 |
Target (abbrv.) | Siglec-9 |
Target (full name) | Sialic acid-binding Ig-like lectin 9 |
Somalogic ID (Sequence ID) | SL005219 (3007-7_2) |
Entrez Gene Symbol | SIGLEC9 |
UniProt ID | Q9Y336 |
UniProt Comment |
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Pathway Studio |
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All locus annotations are based on the sentinel SNP (rs3745542) and 2 proxy variant(s) that is/are in linkage disequilibrium r2 ≥ 0.8. Linkage disequilibrium is based on data from the 1000 Genomes Project, phase 3 version 5, European population and was retrieved using SNiPA's Block Annotation feature.
Download the detailed results of SNiPA's block annotation (PDF)
Genes hit or close-by |
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Trait | P | Study | Source |
---|---|---|---|
cg12683641 (chr19:51587126) | 4×10-39 | 10.1101/033084 (DOI) | BIOS QTL cis-meQTLs |
cg25263454 (chr19:51587385) | 2.6×10-10 | 10.1101/033084 (DOI) | BIOS QTL cis-meQTLs |
Cutaneous melanoma (skin cancer) | 8.7×10-6 | 21926416 (PMID) | GRASP2 nonQTL |
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