Target | cis/trans | Study | SNP | SNP location | Maj/min allele | MAF | N | βinv | seinv | Pinv | fclog | Plog | Praw |
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Siglec-9 | cis | Discovery | rs17801525 | 19:51,615,155 | G/A | 0.11 | 997 | -0.492 | 0.070 | 3.9×10-12 | -2.920 | 2.7×10-14 | 4.4×10-15 |
Siglec-9 | cis | Replication | rs12973316 | 19:51,615,048 | G/A | 0.26 | 337 | -0.427 | 0.074 | 2×10-8 | -2.570 | 2.3×10-9 | 3.6×10-7 |
Target (abbrv.) | Siglec-9 |
Target (full name) | Sialic acid-binding Ig-like lectin 9 |
Somalogic ID (Sequence ID) | SL005219 (3007-7_2) |
Entrez Gene Symbol | SIGLEC9 |
UniProt ID | Q9Y336 |
UniProt Comment |
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Pathway Studio |
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All locus annotations are based on the sentinel SNP (rs17801525) and 6 proxy variant(s) that is/are in linkage disequilibrium r2 ≥ 0.8. Linkage disequilibrium is based on data from the 1000 Genomes Project, phase 3 version 5, European population and was retrieved using SNiPA's Block Annotation feature.
Download the detailed results of SNiPA's block annotation (PDF)
Genes hit or close-by |
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Potentially regulated genes |
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eQTL genes |
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Trait | P | Study | Source |
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cg02592403 (chr19:51614886) | 9.4×10-137 | 10.1101/033084 (DOI) | BIOS QTL cis-meQTLs |